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Glt6d1 glycosyltransferase 6 domain containing 1 [ Mus musculus (house mouse) ]

Gene ID: 71103, updated on 2-Nov-2024

Summary

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Official Symbol
Glt6d1provided by MGI
Official Full Name
glycosyltransferase 6 domain containing 1provided by MGI
Primary source
MGI:MGI:1918353
See related
Ensembl:ENSMUSG00000036401 AllianceGenome:MGI:1918353
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
GT6m7; 4933411C14Rik
Summary
Predicted to enable glycosyltransferase activity. Predicted to be involved in lipid glycosylation. Predicted to be located in membrane. Predicted to be active in Golgi apparatus and vesicle. Orthologous to human GLT6D1 (glycosyltransferase 6 domain containing 1). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Restricted expression toward testis adult (RPKM 15.7) See more
Orthologs
human all
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Genomic context

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See Glt6d1 in Genome Data Viewer
Location:
2 A3; 2 18.07 cM
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (25673474..25705908, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (25783462..25815896, complement)

Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene lipocalin 3 Neighboring gene lipocalin 11 Neighboring gene predicted gene 13539 Neighboring gene predicted gene, 35689 Neighboring gene lipocalin 9 Neighboring gene spermatogenesis and oogenesis specific basic helix-loop-helix 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Long-term evolution of the CAZY glycosyltransferase 6 (ABO) gene family from fishes to mammals--a birth-and-death evolution model. Turcot-Dubois AL, et al. Glycobiology, 2007 May. PMID 17298992
  2. CRISPR/Cas9-mediated genome-edited mice reveal 10 testis-enriched genes are dispensable for male fecundity. Park S, et al. Biol Reprod, 2020 Aug 4. PMID 32561905, Free PMC Article
  3. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  4. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  5. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article

See all (11) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

General gene information

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Markers

Homology

Clone Names

  • MGC130548

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables glycosyltransferase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables hexosyltransferase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
  
involved_in lipid glycosylation IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in Golgi apparatus IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  
is_active_in vesicle IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
glycosyltransferase 6 domain-containing protein 1
Names
novel glycosyltransferase family 6 protein
NP_001034184.1
NP_001405661.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001039095.2 → NP_001034184.1  glycosyltransferase 6 domain-containing protein 1 isoform 1

    See identical proteins and their annotated locations for NP_001034184.1

    Status: VALIDATED

    Source sequence(s)
    AL731682, BX649340
    Consensus CDS
    CCDS15791.1
    UniProtKB/Swiss-Prot
    Q2NKH9
    Related
    ENSMUSP00000048642.5, ENSMUST00000038010.5
    Conserved Domains (1) summary
    cd02515
    Location:45 → 308
    Glyco_transf_6; Glycosyltransferase family 6 comprises enzymes responsible for the production of the human ABO blood group antigens

  2. NM_001418732.1 → NP_001405661.1  glycosyltransferase 6 domain-containing protein 1 isoform 2

    Status: VALIDATED

    Source sequence(s)
    AL731682, BX649340

RNA

  1. NR_184806.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL731682, BX649340

  2. NR_184807.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL731682, BX649340

  3. NR_184808.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL731682, BX649340

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000068.8 Reference GRCm39 C57BL/6J

    Range
    25673474..25705908 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_003953720.1 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q2NKH9.1 GenPept UniProtKB/Swiss-Prot:Q2NKH9

Gene LinkOut

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