U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

4921513I03Rik RIKEN cDNA 4921513I03 gene [ Mus musculus (house mouse) ]

Gene ID: 70874, updated on 2-Nov-2024

Summary

Official Symbol
4921513I03Rikprovided by MGI
Official Full Name
RIKEN cDNA 4921513I03 geneprovided by MGI
Primary source
MGI:MGI:1918124
See related
Ensembl:ENSMUSG00000044544 AllianceGenome:MGI:1918124
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary
Is expressed in dorsal root ganglion; facial ganglion; trigeminal ganglion; and ventral grey horn. [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in testis adult (RPKM 4.1) and bladder adult (RPKM 0.2) See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See 4921513I03Rik in Genome Data Viewer
Location:
10 D2; 10 68.73 cM
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 10 NC_000076.7 (120601637..120614791)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 10 NC_000076.6 (120765732..120778886)

Chromosome 10 - NC_000076.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 35130 Neighboring gene predicted gene, 35182 Neighboring gene STARR-seq mESC enhancer starr_28072 Neighboring gene methionine sulfoxide reductase B3 Neighboring gene STARR-seq mESC enhancer starr_28073 Neighboring gene predicted gene 15910 Neighboring gene STARR-positive B cell enhancer ABC_E581 Neighboring gene predicted gene 4473

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_038000.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) is the longer transcript.
    Source sequence(s)
    AK014882, AK076916
    Related
    ENSMUST00000056994.5
  2. NR_038003.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) has an alternate 3' exon, as compared to variant 1.
    Source sequence(s)
    AK014882, AK076916, BX631768

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000076.7 Reference GRCm39 C57BL/6J

    Range
    120601637..120614791
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)