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WDR6 WD repeat domain 6 [ Macaca mulatta (Rhesus monkey) ]

Gene ID: 708505, updated on 17-Aug-2024

Summary

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Official Symbol
WDR6provided by VGNC
Official Full Name
WD repeat domain 6provided by VGNC
Primary source
VGNC:VGNC:78790
Locus tag
EGK_11653
See related
Ensembl:ENSMMUG00000005649
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Macaca mulatta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Orthologs
human mouse all
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Genomic context

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See WDR6 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
7
Annotation release Status Assembly Chr Location
103 current Mmul_10 (GCF_003339765.1) 2 NC_041755.1 (105082760..105091769)
102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 2 NC_027894.1 (93363442..93372303, complement)

Chromosome 2 - NC_041755.1Genomic Context describing neighboring genes Neighboring gene ariadne RBR E3 ubiquitin protein ligase 2 Neighboring gene uncharacterized LOC106996921 Neighboring gene prolyl 4-hydroxylase, transmembrane Neighboring gene DALR anticodon binding domain containing 3 Neighboring gene microRNA mir-425 Neighboring gene microRNA mir-191

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome sequencing and comparison of two nonhuman primate animal models, the cynomolgus and Chinese rhesus macaques. Yan G, et al. Nat Biotechnol, 2011 Oct 16. PMID 22002653
  2. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in tRNA methylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
tRNA (34-2'-O)-methyltransferase regulator WDR6; WD repeat-containing protein 6

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001261701.2 → NP_001248630.1  tRNA (34-2'-O)-methyltransferase regulator WDR6

    See identical proteins and their annotated locations for NP_001248630.1

    Status: PROVISIONAL

    Source sequence(s)
    JV046068
    UniProtKB/TrEMBL
    A0A5F7ZQL1, A0A8J8Y6K5, F6W4V1, G7MIN9, H9F586
    Related
    ENSMMUP00000007465.4, ENSMMUT00000007942.4
    Conserved Domains (3) summary
    COG2319
    Location:844 → 1149
    WD40; WD40 repeat [General function prediction only]
    sd00039
    Location:147 → 184
    7WD40; WD40 repeat [structural motif]
    cl02567
    Location:205 → 355
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mmul_10 Primary Assembly

Genomic

  1. NC_041755.1 Reference Mmul_10 Primary Assembly

    Range
    105082760..105091769
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015130816.2 → XP_014986302.1  WD repeat-containing protein 6 isoform X1

    UniProtKB/TrEMBL
    A0A5F8A5X4
    Related
    ENSMMUP00000073341.1, ENSMMUT00000092657.1
    Conserved Domains (3) summary
    COG2319
    Location:61 → 328
    WD40; WD40 repeat [General function prediction only]
    sd00039
    Location:66 → 103
    7WD40; WD40 repeat [structural motif]
    cl02567
    Location:124 → 274
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

RNA

  1. XR_003726939.1 RNA Sequence

  2. XR_003726940.1 RNA Sequence

  3. XR_001443009.2 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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