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TSPAN1 tetraspanin 1 [ Macaca mulatta (Rhesus monkey) ]

Gene ID: 707431, updated on 17-Aug-2024

Summary

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Official Symbol
TSPAN1provided by VGNC
Official Full Name
tetraspanin 1provided by VGNC
Primary source
VGNC:VGNC:79263
Locus tag
EGK_00709
See related
Ensembl:ENSMMUG00000016452
Gene type
protein coding
RefSeq status
MODEL
Organism
Macaca mulatta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Orthologs
human mouse all
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Genomic context

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See TSPAN1 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
11
Annotation release Status Assembly Chr Location
103 current Mmul_10 (GCF_003339765.1) 1 NC_041754.1 (178204806..178217330, complement)
102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 1 NC_027893.1 (45789483..45800724)

Chromosome 1 - NC_041754.1Genomic Context describing neighboring genes Neighboring gene leucine rich adaptor protein 1 Neighboring gene uncharacterized LOC114672613 Neighboring gene protein O-linked mannose N-acetylglucosaminyltransferase 1 (beta 1,2-) Neighboring gene PIK3R3 upstream open reading frame Neighboring gene 40S ribosomal protein S29 pseudogene Neighboring gene phosphoinositide-3-kinase regulatory subunit 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome sequencing and comparison of two nonhuman primate animal models, the cynomolgus and Chinese rhesus macaques. Yan G, et al. Nat Biotechnol, 2011 Oct 16. PMID 22002653
  2. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
tetraspanin-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mmul_10 Primary Assembly

Genomic

  1. NC_041754.1 Reference Mmul_10 Primary Assembly

    Range
    178204806..178217330 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_028834221.1 → XP_028690054.1  tetraspanin-1

    UniProtKB/TrEMBL
    A0A5F8ABB2, A0A8J8XEK6, F7GF39, G7MGQ6
    Related
    ENSMMUP00000021610.2, ENSMMUT00000023101.4
    Conserved Domains (1) summary
    pfam00335
    Location:7 → 235
    Tetraspannin; Tetraspanin family

  2. XM_001107311.4 → XP_001107311.1  tetraspanin-1

    See identical proteins and their annotated locations for XP_001107311.1

    UniProtKB/TrEMBL
    A0A5F8ABB2, A0A8J8XEK6, F7GF39, G7MGQ6
    Conserved Domains (1) summary
    pfam00335
    Location:7 → 235
    Tetraspannin; Tetraspanin family

  3. XM_015138658.2 → XP_014994144.1  tetraspanin-1

    UniProtKB/TrEMBL
    A0A5F8ABB2, A0A8J8XEK6, F7GF39, G7MGQ6
    Related
    ENSMMUP00000065126.1, ENSMMUT00000091271.1
    Conserved Domains (1) summary
    pfam00335
    Location:7 → 235
    Tetraspannin; Tetraspanin family
Nucleotide Protein
Heading Accession and Version

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