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6330407A03Rik RIKEN cDNA 6330407A03 gene [ Mus musculus (house mouse) ]

Gene ID: 70720, updated on 2-Nov-2024

Summary

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Official Symbol
6330407A03Rikprovided by MGI
Official Full Name
RIKEN cDNA 6330407A03 geneprovided by MGI
Primary source
MGI:MGI:1917970
See related
AllianceGenome:MGI:1917970
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary
Acts upstream of or within response to wounding. [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See 6330407A03Rik in Genome Data Viewer
Location:
4 A1; 4 2.07 cM
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 4 NC_000070.7 (3714964..3716813)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 4 NC_000070.6 (3714964..3716813)

Chromosome 4 - NC_000070.7Genomic Context describing neighboring genes Neighboring gene trimethylguanosine synthase 1 Neighboring gene STARR-positive B cell enhancer ABC_E4609 Neighboring gene STARR-positive B cell enhancer mm9_chr4:3574269-3574569 Neighboring gene STARR-positive B cell enhancer ABC_E6150 Neighboring gene RIKEN cDNA 2210414B05 gene Neighboring gene STARR-seq mESC enhancer starr_09415 Neighboring gene predicted gene, 42250 Neighboring gene LYN proto-oncogene, Src family tyrosine kinase Neighboring gene STARR-positive B cell enhancer mm9_chr4:3651863-3652164 Neighboring gene STARR-seq mESC enhancer starr_09416 Neighboring gene high mobility group box 3 pseudogene Neighboring gene predicted gene, 22781

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Identification of candidate long non-coding RNAs in response to myocardial infarction. Zangrando J, et al. BMC Genomics, 2014 Jun 10. PMID 24917243, Free PMC Article
  2. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  3. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  4. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
  5. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article

See all (8) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by MGI

Process Evidence Code Pubs
acts_upstream_of_or_within response to wounding IEP
Inferred from Expression Pattern
more info
 PubMed 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_028126.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL772401

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000070.7 Reference GRCm39 C57BL/6J

    Range
    3714964..3716813
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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