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TNPO1 transportin 1 [ Macaca mulatta (Rhesus monkey) ]

Gene ID: 707195, updated on 17-Aug-2024

Summary

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Official Symbol
TNPO1provided by VGNC
Official Full Name
transportin 1provided by VGNC
Primary source
VGNC:VGNC:79961
See related
Ensembl:ENSMMUG00000020923
Gene type
protein coding
RefSeq status
MODEL
Organism
Macaca mulatta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Orthologs
human mouse all
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Genomic context

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See TNPO1 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
26
Annotation release Status Assembly Chr Location
103 current Mmul_10 (GCF_003339765.1) 6 NC_041759.1 (69643381..69738813)
102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 6 NC_027898.1 (69331532..69430458)

Chromosome 6 - NC_041759.1Genomic Context describing neighboring genes Neighboring gene cold shock domain-containing protein E1 pseudogene Neighboring gene uncharacterized LOC706882 Neighboring gene uncharacterized LOC106998804 Neighboring gene 60S ribosomal protein L35a pseudogene Neighboring gene CTD nuclear envelope phosphatase 1 pseudogene Neighboring gene FCH and mu domain containing endocytic adaptor 2 Neighboring gene calcineurin B homologous protein 1 pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables nuclear import signal receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nuclear localization sequence binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables small GTPase binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein import into nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transportin-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mmul_10 Primary Assembly

Genomic

  1. NC_041759.1 Reference Mmul_10 Primary Assembly

    Range
    69643381..69738813
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015140266.2 → XP_014995752.2  transportin-1 isoform X1

    UniProtKB/TrEMBL
    A0A1D5QQ14, A0A1D5R085, G7MU97, H9EQ62
    Related
    ENSMMUP00000050141.2, ENSMMUT00000053303.2
    Conserved Domains (2) summary
    COG5215
    Location:32 → 767
    KAP95; Karyopherin (importin) beta [Intracellular trafficking and secretion]
    sd00044
    Location:103 → 124
    HEAT; HEAT repeat [structural motif]

  2. XM_015140267.2 → XP_014995753.2  transportin-1 isoform X2

    UniProtKB/TrEMBL
    A0A1D5QQR3, G7MU97, H9EQ61
    Related
    ENSMMUP00000050391.2, ENSMMUT00000064474.2
    Conserved Domains (2) summary
    COG5215
    Location:24 → 759
    KAP95; Karyopherin (importin) beta [Intracellular trafficking and secretion]
    sd00044
    Location:95 → 116
    HEAT; HEAT repeat [structural motif]

  3. XM_028849506.1 → XP_028705339.1  transportin-1 isoform X2

    UniProtKB/TrEMBL
    A0A1D5QQR3, G7MU97, H9EQ61
    Related
    ENSMMUP00000027531.4, ENSMMUT00000029424.4
    Conserved Domains (2) summary
    COG5215
    Location:24 → 759
    KAP95; Karyopherin (importin) beta [Intracellular trafficking and secretion]
    sd00044
    Location:95 → 116
    HEAT; HEAT repeat [structural motif]

RNA

  1. XR_001445346.2 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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