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TNFSF4 TNF superfamily member 4 [ Macaca mulatta (Rhesus monkey) ]

Gene ID: 706255, updated on 17-Aug-2024

Summary

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Official Symbol
TNFSF4provided by VGNC
Official Full Name
TNF superfamily member 4provided by VGNC
Primary source
VGNC:VGNC:78598
Locus tag
EGK_01976
See related
Ensembl:ENSMMUG00000061368
Gene type
protein coding
RefSeq status
MODEL
Organism
Macaca mulatta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Also known as
TNLG2B
Orthologs
human mouse all
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Genomic context

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See TNFSF4 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
11
Annotation release Status Assembly Chr Location
103 current Mmul_10 (GCF_003339765.1) 1 NC_041754.1 (30488962..30767011, complement)
102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 1 NC_027893.1 (194087466..194370388)

Chromosome 1 - NC_041754.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC106994771 Neighboring gene uncharacterized LOC114679251 Neighboring gene TNF superfamily member 18 Neighboring gene small nucleolar RNA U13 Neighboring gene centrosomal protein of 57 kDa pseudogene Neighboring gene T-complex protein 1 subunit alpha pseudogene Neighboring gene peroxiredoxin 6 Neighboring gene solute carrier family 9 member C2 (putative)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Comparative genomic analysis of eutherian tumor necrosis factor ligand genes. Premzl M. Immunogenetics, 2016 Feb. PMID 26646413
  2. Genome sequencing and comparison of two nonhuman primate animal models, the cynomolgus and Chinese rhesus macaques. Yan G, et al. Nat Biotechnol, 2011 Oct 16. PMID 22002653
  3. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
  4. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  5. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cytokine activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables tumor necrosis factor receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
tumor necrosis factor ligand superfamily member 4
Names
tumor necrosis factor (ligand) superfamily, member 4 (tax-transcriptionally activated glycoprotein 1, 34kDa)
tumor necrosis factor ligand 2B
tumor necrosis factor superfamily member 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mmul_10 Primary Assembly

Genomic

  1. NC_041754.1 Reference Mmul_10 Primary Assembly

    Range
    30488962..30767011 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015123997.2 → XP_014979483.1  tumor necrosis factor ligand superfamily member 4

    UniProtKB/TrEMBL
    A0A1D5QQH7, A0A8J8YKS3, F7FL80, G7MFC8
    Related
    ENSMMUP00000050304.2, ENSMMUT00000070883.2
    Conserved Domains (1) summary
    smart00207
    Location:74 → 183
    TNF; Tumour necrosis factor family

  2. XM_015123982.2 → XP_014979468.1  tumor necrosis factor ligand superfamily member 4

    UniProtKB/TrEMBL
    A0A1D5QQH7, A0A8J8YKS3, F7FL80, G7MFC8
    Conserved Domains (1) summary
    smart00207
    Location:74 → 183
    TNF; Tumour necrosis factor family

  3. XM_015123991.2 → XP_014979477.1  tumor necrosis factor ligand superfamily member 4

    UniProtKB/TrEMBL
    A0A1D5QQH7, A0A8J8YKS3, F7FL80, G7MFC8
    Conserved Domains (1) summary
    smart00207
    Location:74 → 183
    TNF; Tumour necrosis factor family

  4. XM_028850506.1 → XP_028706339.1  tumor necrosis factor ligand superfamily member 4

    UniProtKB/TrEMBL
    A0A1D5QQH7, A0A8J8YKS3, F7FL80, G7MFC8
    Conserved Domains (1) summary
    smart00207
    Location:74 → 183
    TNF; Tumour necrosis factor family

  5. XM_001101190.4 → XP_001101190.1  tumor necrosis factor ligand superfamily member 4

    See identical proteins and their annotated locations for XP_001101190.1

    UniProtKB/TrEMBL
    A0A1D5QQH7, A0A8J8YKS3, F7FL80, G7MFC8
    Conserved Domains (1) summary
    smart00207
    Location:74 → 183
    TNF; Tumour necrosis factor family

  6. XM_015123968.2 → XP_014979454.1  tumor necrosis factor ligand superfamily member 4

    UniProtKB/TrEMBL
    A0A1D5QQH7, A0A8J8YKS3, F7FL80, G7MFC8
    Conserved Domains (1) summary
    smart00207
    Location:74 → 183
    TNF; Tumour necrosis factor family

  7. XM_015124003.2 → XP_014979489.1  tumor necrosis factor ligand superfamily member 4

    UniProtKB/TrEMBL
    A0A1D5QQH7, A0A8J8YKS3, F7FL80, G7MFC8
    Conserved Domains (1) summary
    smart00207
    Location:74 → 183
    TNF; Tumour necrosis factor family

  8. XM_028850527.1 → XP_028706360.1  tumor necrosis factor ligand superfamily member 4

    UniProtKB/TrEMBL
    A0A1D5QQH7, A0A8J8YKS3, F7FL80, G7MFC8
    Conserved Domains (1) summary
    smart00207
    Location:74 → 183
    TNF; Tumour necrosis factor family

RNA

  1. XR_003730952.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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