Tcerg1l transcription elongation regulator 1-like [Mus musculus (house mouse)] - Gene

Summary

Official Symbol: Tcerg1lprovided by MGI
Official Full Name: transcription elongation regulator 1-likeprovided by MGI
Primary source: MGI:MGI:1917821
See related: Ensembl:ENSMUSG00000091002 AllianceGenome:MGI:1917821
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Mus musculus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as: 5730476P14Rik
Summary: Predicted to enable RNA polymerase binding activity and transcription coregulator activity. Predicted to be active in nucleus. Is expressed in central nervous system and dorsal root ganglion. Orthologous to human TCERG1L (transcription elongation regulator 1 like). [provided by Alliance of Genome Resources, Nov 2024]
Expression: Biased expression in CNS E18 (RPKM 7.1), CNS E14 (RPKM 5.4) and 7 other tissues See more
Orthologs: human all
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Genomic context

Location:: 7 F4; 7 82.95 cM

Exon count:: 12

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCm39 (GCF_000001635.27)	7	NC_000073.7 (137810701..137999459, complement)
108.20200622	previous assembly	GRCm38.p6 (GCF_000001635.26)	7	NC_000073.6 (138208972..138397730, complement)

Chromosome 7 - NC_000073.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
Description: RNA profiling data sets generated by the Mouse ENCODE project.
BioProject: PRJNA66167
Publication: PMID 25409824
Analysis date: n/a

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Roles of Stra8 and Tcerg1l in retinoic acid induced spermatogonial differentiation in mousedagger.
Title: Roles of Stra8 and Tcerg1l in retinoic acid induced spermatogonial differentiation in mouse†.

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Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics (MGI)

Targeted (2) 1 citation

General gene information

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Markers

26.MMHAP26FLA5.seq (e-PCR)
- UniSTS:123728

D7Mit334 (e-PCR), detects polymorphism
- UniSTS:131236

NoName (e-PCR)
- UniSTS:487918

Gene Ontology Provided by MGI

Function	Evidence Code	Pubs
enables RNA polymerase binding	IBA Inferred from Biological aspect of Ancestor more info
enables RNA polymerase binding	IEA Inferred from Electronic Annotation more info
enables transcription coregulator activity	IBA Inferred from Biological aspect of Ancestor more info

Component	Evidence Code	Pubs
is_active_in nucleus	IBA Inferred from Biological aspect of Ancestor more info

General protein information

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Preferred Names: transcription elongation regulator 1-like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.