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ZFP90 ZFP90 zinc finger protein [ Macaca mulatta (Rhesus monkey) ]

Gene ID: 704279, updated on 17-Aug-2024

Summary

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Official Symbol
ZFP90provided by VGNC
Official Full Name
ZFP90 zinc finger proteinprovided by VGNC
Primary source
VGNC:VGNC:99633
Locus tag
EGK_12927
See related
Ensembl:ENSMMUG00000041138
Gene type
protein coding
RefSeq status
MODEL
Organism
Macaca mulatta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Orthologs
human mouse all
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Genomic context

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See ZFP90 in Genome Data Viewer
Location:
chromosome: 20
Exon count:
6
Annotation release Status Assembly Chr Location
103 current Mmul_10 (GCF_003339765.1) 20 NC_041773.1 (55771154..55807894)
102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 20 NC_027912.1 (52926803..52963790)

Chromosome 20 - NC_041773.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC114674334 Neighboring gene 60S ribosomal protein L35a pseudogene Neighboring gene U4 spliceosomal RNA Neighboring gene small nucleolar RNA U109 Neighboring gene small nucleolar RNA U109

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger protein 90 homolog
Names
Zinc finger protein 90-like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mmul_10 Primary Assembly

Genomic

  1. NC_041773.1 Reference Mmul_10 Primary Assembly

    Range
    55771154..55807894
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015126470.2 → XP_014981956.1  zinc finger protein 90 homolog isoform X1

    Conserved Domains (7) summary
    smart00349
    Location:98 → 158
    KRAB; krueppel associated box
    COG5048
    Location:420 → 716
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:639 → 659
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:693 → 715
    zf-C2H2; Zinc finger, C2H2 type
    pfam01352
    Location:98 → 137
    KRAB; KRAB box
    pfam13465
    Location:623 → 648
    zf-H2C2_2; Zinc-finger double domain
    pfam13900
    Location:47 → 91
    GVQW; Putative domain of unknown function

  2. XM_015126477.2 → XP_014981963.1  zinc finger protein 90 homolog isoform X2

    UniProtKB/TrEMBL
    A0A1D5QP13, A0A663DEY6, A0A8J8XHN8, G7NQK9
    Conserved Domains (6) summary
    smart00349
    Location:14 → 74
    KRAB; krueppel associated box
    COG5048
    Location:336 → 632
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:555 → 575
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:609 → 631
    zf-C2H2; Zinc finger, C2H2 type
    pfam01352
    Location:14 → 53
    KRAB; KRAB box
    pfam13465
    Location:539 → 564
    zf-H2C2_2; Zinc-finger double domain

  3. XM_015126473.2 → XP_014981959.1  zinc finger protein 90 homolog isoform X2

    UniProtKB/TrEMBL
    A0A1D5QP13, A0A663DEY6, A0A8J8XHN8, G7NQK9
    Related
    ENSMMUP00000049790.2, ENSMMUT00000060009.2
    Conserved Domains (6) summary
    smart00349
    Location:14 → 74
    KRAB; krueppel associated box
    COG5048
    Location:336 → 632
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:555 → 575
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:609 → 631
    zf-C2H2; Zinc finger, C2H2 type
    pfam01352
    Location:14 → 53
    KRAB; KRAB box
    pfam13465
    Location:539 → 564
    zf-H2C2_2; Zinc-finger double domain

  4. XM_015126476.2 → XP_014981962.1  zinc finger protein 90 homolog isoform X2

    UniProtKB/TrEMBL
    A0A1D5QP13, A0A663DEY6, A0A8J8XHN8, G7NQK9
    Conserved Domains (6) summary
    smart00349
    Location:14 → 74
    KRAB; krueppel associated box
    COG5048
    Location:336 → 632
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:555 → 575
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:609 → 631
    zf-C2H2; Zinc finger, C2H2 type
    pfam01352
    Location:14 → 53
    KRAB; KRAB box
    pfam13465
    Location:539 → 564
    zf-H2C2_2; Zinc-finger double domain

  5. XM_015126474.2 → XP_014981960.1  zinc finger protein 90 homolog isoform X2

    UniProtKB/TrEMBL
    A0A1D5QP13, A0A663DEY6, A0A8J8XHN8, G7NQK9
    Conserved Domains (6) summary
    smart00349
    Location:14 → 74
    KRAB; krueppel associated box
    COG5048
    Location:336 → 632
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:555 → 575
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:609 → 631
    zf-C2H2; Zinc finger, C2H2 type
    pfam01352
    Location:14 → 53
    KRAB; KRAB box
    pfam13465
    Location:539 → 564
    zf-H2C2_2; Zinc-finger double domain

  6. XM_015126472.2 → XP_014981958.1  zinc finger protein 90 homolog isoform X2

    UniProtKB/TrEMBL
    A0A1D5QP13, A0A663DEY6, A0A8J8XHN8, G7NQK9
    Conserved Domains (6) summary
    smart00349
    Location:14 → 74
    KRAB; krueppel associated box
    COG5048
    Location:336 → 632
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:555 → 575
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:609 → 631
    zf-C2H2; Zinc finger, C2H2 type
    pfam01352
    Location:14 → 53
    KRAB; KRAB box
    pfam13465
    Location:539 → 564
    zf-H2C2_2; Zinc-finger double domain

  7. XM_015126475.2 → XP_014981961.1  zinc finger protein 90 homolog isoform X2

    UniProtKB/TrEMBL
    A0A1D5QP13, A0A663DEY6, A0A8J8XHN8, G7NQK9
    Conserved Domains (6) summary
    smart00349
    Location:14 → 74
    KRAB; krueppel associated box
    COG5048
    Location:336 → 632
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:555 → 575
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:609 → 631
    zf-C2H2; Zinc finger, C2H2 type
    pfam01352
    Location:14 → 53
    KRAB; KRAB box
    pfam13465
    Location:539 → 564
    zf-H2C2_2; Zinc-finger double domain

  8. XM_015126478.2 → XP_014981964.1  zinc finger protein 90 homolog isoform X3

    Related
    ENSMMUP00000056865.2, ENSMMUT00000077661.2
    Conserved Domains (5) summary
    smart00349
    Location:1 → 32
    KRAB; krueppel associated box
    COG5048
    Location:294 → 590
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:513 → 533
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:567 → 589
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:497 → 522
    zf-H2C2_2; Zinc-finger double domain

RNA

  1. XR_001441786.2 RNA Sequence

Nucleotide Protein
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