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Gpatch2l G patch domain containing 2 like [ Mus musculus (house mouse) ]

Gene ID: 70373, updated on 2-Nov-2024

Summary

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Official Symbol
Gpatch2lprovided by MGI
Official Full Name
G patch domain containing 2 likeprovided by MGI
Primary source
MGI:MGI:1917623
See related
Ensembl:ENSMUSG00000021254 AllianceGenome:MGI:1917623
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Kiaa1152; 1700020O03Rik; 4732487G21Rik; A630090I05Rik
Summary
Predicted to be active in nucleus. Is expressed in cerebral cortex subventricular zone; cerebral cortex ventricular layer; and cortical plate. Orthologous to human GPATCH2L (G-patch domain containing 2 like). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Ubiquitous expression in CNS E18 (RPKM 5.0), CNS E14 (RPKM 4.5) and 28 other tissues See more
Orthologs
human all
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Genomic context

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See Gpatch2l in Genome Data Viewer
Location:
12 D2; 12 40.36 cM
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 12 NC_000078.7 (86288569..86341439)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 12 NC_000078.6 (86241795..86294657)

Chromosome 12 - NC_000078.7Genomic Context describing neighboring genes Neighboring gene intraflagellar transport 43 Neighboring gene STARR-seq mESC enhancer starr_32794 Neighboring gene predicted gene 805 Neighboring gene predicted gene, 32473 Neighboring gene STARR-seq mESC enhancer starr_32801 Neighboring gene STARR-positive B cell enhancer ABC_E742 Neighboring gene STARR-positive B cell enhancer ABC_E4037 Neighboring gene predicted gene, 40481 Neighboring gene STARR-seq mESC enhancer starr_32803 Neighboring gene predicted gene, 32666 Neighboring gene predicted gene, 40483 Neighboring gene estrogen related receptor, beta

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Functional genomic landscape of cancer-intrinsic evasion of killing by T cells. Lawson KA, et al. Nature, 2020 Oct. PMID 32968282, Free PMC Article
  2. Prediction of the coding sequences of mouse homologues of KIAA gene: III. the complete nucleotide sequences of 500 mouse KIAA-homologous cDNAs identified by screening of terminal sequences of cDNA clones randomly sampled from size-fractionated libraries. Okazaki N, et al. DNA Res, 2003 Aug 31. PMID 14621295
  3. Construction of long-transcript enriched cDNA libraries from submicrogram amounts of total RNAs by a universal PCR amplification method. Piao Y, et al. Genome Res, 2001 Sep. PMID 11544199, Free PMC Article
  4. Cell-Type-Specific Gene Expression in Developing Mouse Neocortex: Intermediate Progenitors Implicated in Axon Development. Bedogni F, et al. Front Mol Neurosci, 2021. PMID 34321999, Free PMC Article
  5. BayGenomics: a resource of insertional mutations in mouse embryonic stem cells. Stryke D, et al. Nucleic Acids Res, 2003 Jan 1. PMID 12520002, Free PMC Article

See all (20) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 
  • Targeted (2) 

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
G patch domain-containing protein 2-like

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001324488.1 → NP_001311417.1  G patch domain-containing protein 2-like isoform 2

    Status: VALIDATED

    Source sequence(s)
    AK031712, AK129299, BE685832, BY146148
    Consensus CDS
    CCDS88376.1
    UniProtKB/TrEMBL
    Q3UGI2
    Related
    ENSMUSP00000065858.6, ENSMUST00000071106.6

  2. NM_027405.3 → NP_081681.2  G patch domain-containing protein 2-like isoform 1

    See identical proteins and their annotated locations for NP_081681.2

    Status: VALIDATED

    Source sequence(s)
    BC058256, BY146148
    Consensus CDS
    CCDS26065.1
    UniProtKB/Swiss-Prot
    Q6PE65, Q6ZPW9, Q8CD08, Q9DA49
    UniProtKB/TrEMBL
    Q3UGI2
    Related
    ENSMUSP00000152284.2, ENSMUST00000221368.2

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000078.7 Reference GRCm39 C57BL/6J

    Range
    86288569..86341439
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006516219.4 → XP_006516282.1  G patch domain-containing protein 2-like isoform X1

    UniProtKB/TrEMBL
    Q3UGI2

  2. XM_006516220.5 → XP_006516283.1  G patch domain-containing protein 2-like isoform X2

    UniProtKB/TrEMBL
    Q3UGI2

  3. XM_036157609.1 → XP_036013502.1  G patch domain-containing protein 2-like isoform X4

  4. XM_006516222.4 → XP_006516285.1  G patch domain-containing protein 2-like isoform X5

  5. XM_030246903.2 → XP_030102763.1  G patch domain-containing protein 2-like isoform X3

  6. XM_017315181.3 → XP_017170670.1  G patch domain-containing protein 2-like isoform X6

Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q6PE65.1 GenPept UniProtKB/Swiss-Prot:Q6PE65

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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