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CASC3 CASC3 exon junction complex subunit [ Macaca mulatta (Rhesus monkey) ]

Gene ID: 699712, updated on 17-Aug-2024

Summary

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Official Symbol
CASC3provided by VGNC
Official Full Name
CASC3 exon junction complex subunitprovided by VGNC
Primary source
VGNC:VGNC:99126
See related
Ensembl:ENSMMUG00000045187
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Macaca mulatta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Orthologs
human mouse all
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Genomic context

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See CASC3 in Genome Data Viewer
Location:
chromosome: 16
Exon count:
14
Annotation release Status Assembly Chr Location
103 current Mmul_10 (GCF_003339765.1) 16 NC_041769.1 (51282241..51317930)
102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 16 NC_027908.1 (45953368..45987716)

Chromosome 16 - NC_041769.1Genomic Context describing neighboring genes Neighboring gene nuclear receptor subfamily 1 group D member 1 Neighboring gene MSL complex subunit 1 Neighboring gene Rap guanine nucleotide exchange factor like 1 Neighboring gene uncharacterized LOC114673149 Neighboring gene WAS/WASL interacting protein family member 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of exon-exon junction complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein CASC3
Names
cancer susceptibility 3
cancer susceptibility candidate 3

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001260566.1 → NP_001247495.1  protein CASC3

    See identical proteins and their annotated locations for NP_001247495.1

    Status: PROVISIONAL

    Source sequence(s)
    JV046462
    UniProtKB/TrEMBL
    A0A1D5QGZ6, A0A1D5R604, H9FRD9
    Related
    ENSMMUP00000055742.1, ENSMMUT00000078868.2
    Conserved Domains (1) summary
    smart01044
    Location:146 → 248
    Btz; CASC3/Barentsz eIF4AIII binding

RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mmul_10 Primary Assembly

Genomic

  1. NC_041769.1 Reference Mmul_10 Primary Assembly

    Range
    51282241..51317930
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015119568.2 → XP_014975054.1  protein CASC3 isoform X1

    UniProtKB/TrEMBL
    A0A1D5QGZ6, F6XDK9
    Related
    ENSMMUP00000029378.4, ENSMMUT00000031397.4
    Conserved Domains (2) summary
    smart01044
    Location:146 → 248
    Btz; CASC3/Barentsz eIF4AIII binding
    pfam11018
    Location:549 → 670
    Cuticle_3; Pupal cuticle protein C1
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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