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LIN7A lin-7 homolog A, crumbs cell polarity complex component [ Macaca mulatta (Rhesus monkey) ]

Gene ID: 697557, updated on 17-Aug-2024

Summary

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Official Symbol
LIN7Aprovided by VGNC
Official Full Name
lin-7 homolog A, crumbs cell polarity complex componentprovided by VGNC
Primary source
VGNC:VGNC:74068
See related
Ensembl:ENSMMUG00000011671
Gene type
protein coding
RefSeq status
MODEL
Organism
Macaca mulatta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Orthologs
human mouse all
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Genomic context

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See LIN7A in Genome Data Viewer
Location:
chromosome: 11
Exon count:
8
Annotation release Status Assembly Chr Location
103 current Mmul_10 (GCF_003339765.1) 11 NC_041764.1 (80319701..80471918, complement)
102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 11 NC_027903.1 (79678344..79831184, complement)

Chromosome 11 - NC_041764.1Genomic Context describing neighboring genes Neighboring gene myogenic factor 5 Neighboring gene uncharacterized LOC107000955 Neighboring gene uncharacterized LOC114670904 Neighboring gene microRNA mir-618 Neighboring gene uncharacterized LOC107000949 Neighboring gene nucleophosmin pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables L27 domain binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in maintenance of epithelial cell apical/basal polarity IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in neurotransmitter secretion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein localization to basolateral plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of MPP7-DLG1-LIN7 complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in basolateral plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cell-cell junction IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in synapse IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein lin-7 homolog A

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mmul_10 Primary Assembly

Genomic

  1. NC_041764.1 Reference Mmul_10 Primary Assembly

    Range
    80319701..80471918 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001087299.4 → XP_001087299.1  protein lin-7 homolog A isoform X1

    See identical proteins and their annotated locations for XP_001087299.1

    UniProtKB/TrEMBL
    F7HGT6, H9FCG4
    Related
    ENSMMUP00000015316.4, ENSMMUT00000016346.4
    Conserved Domains (2) summary
    smart00569
    Location:31 → 83
    L27; domain in receptor targeting proteins Lin-2 and Lin-7
    cd00992
    Location:106 → 187
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...

  2. XM_028829755.1 → XP_028685588.1  protein lin-7 homolog A isoform X3

    Conserved Domains (1) summary
    cd00992
    Location:35 → 116
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...

  3. XM_028829754.1 → XP_028685587.1  protein lin-7 homolog A isoform X2

    UniProtKB/TrEMBL
    G7N7R4
    Conserved Domains (1) summary
    cd00992
    Location:40 → 121
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...

RNA

  1. XR_001448120.2 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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