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FDFT1 farnesyl-diphosphate farnesyltransferase 1 [ Macaca mulatta (Rhesus monkey) ]

Gene ID: 696396, updated on 18-Sep-2024

Summary

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Official Symbol
FDFT1provided by VGNC
Official Full Name
farnesyl-diphosphate farnesyltransferase 1provided by VGNC
Primary source
VGNC:VGNC:72631
Locus tag
EGK_18680
See related
Ensembl:ENSMMUG00000054351
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Macaca mulatta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Orthologs
human mouse all
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Genomic context

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See FDFT1 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
8
Annotation release Status Assembly Chr Location
103 current Mmul_10 (GCF_003339765.1) 8 NC_041761.1 (8738123..8772578, complement)
102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 8 NC_027900.1 (7894412..7929184, complement)

Chromosome 8 - NC_041761.1Genomic Context describing neighboring genes Neighboring gene heterogeneous nuclear ribonucleoprotein A1-like Neighboring gene cathepsin B Neighboring gene activated RNA polymerase II transcriptional coactivator p15 pseudogene Neighboring gene nei like DNA glycosylase 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome sequencing and comparison of two nonhuman primate animal models, the cynomolgus and Chinese rhesus macaques. Yan G, et al. Nat Biotechnol, 2011 Oct 16. PMID 22002653
  2. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables squalene synthase [NAD(P)H] activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cholesterol biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in farnesyl diphosphate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
squalene synthase
NP_001247653.1
XP_015000223.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001260724.1 → NP_001247653.1  squalene synthase

    See identical proteins and their annotated locations for NP_001247653.1

    Status: PROVISIONAL

    Source sequence(s)
    JV046458
    UniProtKB/TrEMBL
    A0A1D5QYJ8, A0A8J8YAZ6, G7N0H3, H9EUN1
    Related
    ENSMMUP00000053129.2, ENSMMUT00000063140.2
    Conserved Domains (1) summary
    TIGR01559
    Location:38 → 370
    squal_synth; farnesyl-diphosphate farnesyltransferase

RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mmul_10 Primary Assembly

Genomic

  1. NC_041761.1 Reference Mmul_10 Primary Assembly

    Range
    8738123..8772578 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015144737.2 → XP_015000223.1  squalene synthase isoform X1

    UniProtKB/TrEMBL
    A0A5F7Z7X6
    Related
    ENSMMUP00000061600.1, ENSMMUT00000085153.1
    Conserved Domains (1) summary
    TIGR01559
    Location:89 → 421
    squal_synth; farnesyl-diphosphate farnesyltransferase
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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