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2310022B05Rik RIKEN cDNA 2310022B05 gene [ Mus musculus (house mouse) ]

Gene ID: 69551, updated on 28-Oct-2024

Summary

Official Symbol
2310022B05Rikprovided by MGI
Official Full Name
RIKEN cDNA 2310022B05 geneprovided by MGI
Primary source
MGI:MGI:1916801
See related
Ensembl:ENSMUSG00000031983 AllianceGenome:MGI:1916801
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary
Predicted to be located in cytosol. Is expressed in nervous system and neural retina. Orthologous to human C1orf198 (chromosome 1 open reading frame 198). [provided by Alliance of Genome Resources, Oct 2024]
Expression
Ubiquitous expression in lung adult (RPKM 33.3), limb E14.5 (RPKM 32.7) and 28 other tissues See more
Orthologs
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Genomic context

See 2310022B05Rik in Genome Data Viewer
Location:
8 E2; 8 72.81 cM
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 8 NC_000074.7 (125362495..125390108, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 8 NC_000074.6 (124635756..124663369, complement)

Chromosome 8 - NC_000074.7Genomic Context describing neighboring genes Neighboring gene CapStarr-seq enhancer MGSCv37_chr8:127097574-127097727 Neighboring gene angiotensinogen Neighboring gene STARR-seq mESC enhancer starr_23008 Neighboring gene calpain 9 Neighboring gene VISTA enhancer mm1665 Neighboring gene tetratricopeptide repeat domain 13 Neighboring gene predicted gene, 46058 Neighboring gene predicted gene, 30273

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 
  • Targeted (1) 

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 
located_in cytosol ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
uncharacterized protein C1orf198 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_175149.4NP_780358.3  uncharacterized protein C1orf198 homolog

    See identical proteins and their annotated locations for NP_780358.3

    Status: VALIDATED

    Source sequence(s)
    AK084773, BC058626
    Consensus CDS
    CCDS22773.1
    UniProtKB/Swiss-Prot
    Q3TCS2, Q3U2K7, Q3U3E1, Q6PDM3, Q8C3W1
    Related
    ENSMUSP00000034464.7, ENSMUST00000034464.8
    Conserved Domains (1) summary
    pfam15797
    Location:31132
    DUF4706; Domain of unknown function (DUF4706)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000074.7 Reference GRCm39 C57BL/6J

    Range
    125362495..125390108 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)