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TCP10L3 t-complex 10 like 3 (pseudogene) [ Homo sapiens (human) ]

Gene ID: 6953, updated on 17-Sep-2024

Summary

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Official Symbol
TCP10L3provided by HGNC
Official Full Name
t-complex 10 like 3 (pseudogene)provided by HGNC
Primary source
HGNC:HGNC:11656
See related
Ensembl:ENSG00000290751 MIM:187020; AllianceGenome:HGNC:11656
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
TCP10; TCP10A
Annotation information
Annotation category: suggests misassembly
Expression
Restricted expression toward testis (RPKM 4.5) See more
Orthologs
all
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Genomic context

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See TCP10L3 in Genome Data Viewer
Location:
6q27
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (167373090..167384510, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (168755727..168767109, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (167786578..167797998, complement)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:167738113-167738614 Neighboring gene tubulin tyrosine ligase like 2 Neighboring gene mitotic arrest deficient 2 like 1 pseudogene Neighboring gene Sharpr-MPRA regulatory region 6086 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:167769573-167770114 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:167813964-167814643 Neighboring gene Sharpr-MPRA regulatory region 8873 Neighboring gene Sharpr-MPRA regulatory region 3778 Neighboring gene uncharacterized LOC105378126 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:167854012-167854880 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr6:167854881-167855750 Neighboring gene uncharacterized LOC105378127

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. The human homolog of a candidate mouse t complex responder gene: conserved motifs and evolution with punctuated equilibria. Islam SD, et al. Hum Mol Genet, 1993 Dec. PMID 8111376
  2. The cell-polarity protein Par6 links Par3 and atypical protein kinase C to Cdc42. Joberty G, et al. Nat Cell Biol, 2000 Aug. PMID 10934474
  3. Why do cellular proteins linked to K63-polyubiquitin chains not associate with proteasomes? Nathan JA, et al. EMBO J, 2013 Feb 20. PMID 23314748, Free PMC Article
  4. Gsk3β and Tomm20 are substrates of the SCFFbxo7/PARK15 ubiquitin ligase associated with Parkinson's disease. Teixeira FR, et al. Biochem J, 2016 Oct 15. PMID 27503909, Free PMC Article
  5. The DNA sequence and analysis of human chromosome 6. Mungall AJ, et al. Nature, 2003 Oct 23. PMID 14574404

See all (12) citations in PubMed

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Other Names

  • T-complex protein 10A homolog
  • t-complex 10 (a murine tcp homolog)
  • t-complex 10 homolog

Clone Names

  • MGC34049

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_163193.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL592444
    Related
    ENST00000674952.1

  2. NR_163194.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL592444

  3. NR_163195.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL592444

  4. NR_163196.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL592444
    Related
    ENST00000617120.5

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

    Range
    167373090..167384510 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060930.1 Alternate T2T-CHM13v2.0

    Range
    168755727..168767109 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001366311.1: Suppressed sequence

    Description
    NM_001366311.1: This RefSeq was removed because it is now thought that this gene is a pseudogene.

  2. NM_001366312.1: Suppressed sequence

    Description
    NM_001366312.1: This RefSeq was removed because it is now thought that this gene is a pseudogene.

  3. NM_001366313.1: Suppressed sequence

    Description
    NM_001366313.1: This RefSeq was removed because it is now thought that this gene is a pseudogene.

  4. NM_001366317.1: Suppressed sequence

    Description
    NM_001366317.1: This RefSeq was removed because it is now thought that this gene is a pseudogene.

  5. NM_004610.3: Suppressed sequence

    Description
    NM_004610.3: This RefSeq was removed because it is now thought that this gene is a pseudogene.
Nucleotide Protein
Heading Accession and Version

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