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SFMBT1 Scm like with four mbt domains 1 [ Macaca mulatta (Rhesus monkey) ]

Gene ID: 694961, updated on 17-Aug-2024

Summary

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Official Symbol
SFMBT1provided by VGNC
Official Full Name
Scm like with four mbt domains 1provided by VGNC
Primary source
VGNC:VGNC:77279
See related
Ensembl:ENSMMUG00000014527
Gene type
protein coding
RefSeq status
MODEL
Organism
Macaca mulatta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Orthologs
human mouse all
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Genomic context

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See SFMBT1 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
27
Annotation release Status Assembly Chr Location
103 current Mmul_10 (GCF_003339765.1) 2 NC_041755.1 (109083456..109238744, complement)
102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 2 NC_027894.1 (89119399..89275845)

Chromosome 2 - NC_041755.1Genomic Context describing neighboring genes Neighboring gene STIM activating enhancer Neighboring gene musculoskeletal, embryonic nuclear protein 1 Neighboring gene uncharacterized LOC114676360 Neighboring gene plasminogen activator inhibitor 1 RNA-binding protein pseudogene Neighboring gene RFT1 homolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables histone binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription corepressor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
scm-like with four MBT domains protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mmul_10 Primary Assembly

Genomic

  1. NC_041755.1 Reference Mmul_10 Primary Assembly

    Range
    109083456..109238744 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015130702.2 → XP_014986188.1  scm-like with four MBT domains protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A5F8A9B8, F7GAC2
    Conserved Domains (4) summary
    cd09581
    Location:782 → 866
    SAM_Scm-like-4MBT1,2; SAM domain of Scm-like-4MBT1,2 proteins of Polycomb group
    smart00454
    Location:793 → 857
    SAM; Sterile alpha motif
    smart00561
    Location:23 → 120
    MBT; Present in Drosophila Scm, l(3)mbt, and vertebrate SCML2
    pfam12140
    Location:502 → 617
    DUF3588; Protein of unknown function (DUF3588)

  2. XM_015130700.2 → XP_014986186.1  scm-like with four MBT domains protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A5F8A9B8, F7GAC2
    Related
    ENSMMUP00000073519.1, ENSMMUT00000092240.1
    Conserved Domains (4) summary
    cd09581
    Location:782 → 866
    SAM_Scm-like-4MBT1,2; SAM domain of Scm-like-4MBT1,2 proteins of Polycomb group
    smart00454
    Location:793 → 857
    SAM; Sterile alpha motif
    smart00561
    Location:23 → 120
    MBT; Present in Drosophila Scm, l(3)mbt, and vertebrate SCML2
    pfam12140
    Location:502 → 617
    DUF3588; Protein of unknown function (DUF3588)

  3. XM_015130698.2 → XP_014986184.1  scm-like with four MBT domains protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A5F8A9B8, F7GAC2
    Conserved Domains (4) summary
    cd09581
    Location:782 → 866
    SAM_Scm-like-4MBT1,2; SAM domain of Scm-like-4MBT1,2 proteins of Polycomb group
    smart00454
    Location:793 → 857
    SAM; Sterile alpha motif
    smart00561
    Location:23 → 120
    MBT; Present in Drosophila Scm, l(3)mbt, and vertebrate SCML2
    pfam12140
    Location:502 → 617
    DUF3588; Protein of unknown function (DUF3588)

  4. XM_015130699.2 → XP_014986185.1  scm-like with four MBT domains protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A5F8A9B8, F7GAC2
    Conserved Domains (4) summary
    cd09581
    Location:782 → 866
    SAM_Scm-like-4MBT1,2; SAM domain of Scm-like-4MBT1,2 proteins of Polycomb group
    smart00454
    Location:793 → 857
    SAM; Sterile alpha motif
    smart00561
    Location:23 → 120
    MBT; Present in Drosophila Scm, l(3)mbt, and vertebrate SCML2
    pfam12140
    Location:502 → 617
    DUF3588; Protein of unknown function (DUF3588)

  5. XM_028844234.1 → XP_028700067.1  scm-like with four MBT domains protein 1 isoform X2

    UniProtKB/TrEMBL
    F7GAC2
    Conserved Domains (3) summary
    cd09581
    Location:768 → 852
    SAM_Scm-like-4MBT1,2; SAM domain of Scm-like-4MBT1,2 proteins of Polycomb group
    smart00561
    Location:9 → 106
    MBT; Present in Drosophila Scm, l(3)mbt, and vertebrate SCML2
    pfam12140
    Location:488 → 603
    SLED; SLED domain

  6. XM_028844235.1 → XP_028700068.1  scm-like with four MBT domains protein 1 isoform X2

    UniProtKB/TrEMBL
    F7GAC2
    Conserved Domains (3) summary
    cd09581
    Location:768 → 852
    SAM_Scm-like-4MBT1,2; SAM domain of Scm-like-4MBT1,2 proteins of Polycomb group
    smart00561
    Location:9 → 106
    MBT; Present in Drosophila Scm, l(3)mbt, and vertebrate SCML2
    pfam12140
    Location:488 → 603
    SLED; SLED domain

  7. XM_015130703.2 → XP_014986189.1  scm-like with four MBT domains protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A5F8A9B8, F7GAC2
    Related
    ENSMMUP00000019076.3, ENSMMUT00000020381.4
    Conserved Domains (4) summary
    cd09581
    Location:782 → 866
    SAM_Scm-like-4MBT1,2; SAM domain of Scm-like-4MBT1,2 proteins of Polycomb group
    smart00454
    Location:793 → 857
    SAM; Sterile alpha motif
    smart00561
    Location:23 → 120
    MBT; Present in Drosophila Scm, l(3)mbt, and vertebrate SCML2
    pfam12140
    Location:502 → 617
    DUF3588; Protein of unknown function (DUF3588)
Nucleotide Protein
Heading Accession and Version

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