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TRIM38 tripartite motif containing 38 [ Macaca mulatta (Rhesus monkey) ]

Gene ID: 694861, updated on 17-Aug-2024

Summary

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Official Symbol
TRIM38provided by VGNC
Official Full Name
tripartite motif containing 38provided by VGNC
Primary source
VGNC:VGNC:78548
See related
Ensembl:ENSMMUG00000061288
Gene type
protein coding
RefSeq status
MODEL
Organism
Macaca mulatta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Orthologs
human mouse all
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Genomic context

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See TRIM38 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
8
Annotation release Status Assembly Chr Location
103 current Mmul_10 (GCF_003339765.1) 4 NC_041757.1 (144004163..144026996, complement)
102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 4 NC_027896.1 (26548672..26571517)

Chromosome 4 - NC_041757.1Genomic Context describing neighboring genes Neighboring gene H1.1 linker histone, cluster member Neighboring gene uncharacterized LOC114677674 Neighboring gene solute carrier family 17 member 2 Neighboring gene H2A clustered histone 3, pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
tripartite motif-containing protein 38; E3 ubiquitin-protein ligase TRIM38

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mmul_10 Primary Assembly

Genomic

  1. NC_041757.1 Reference Mmul_10 Primary Assembly

    Range
    144004163..144026996 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015135724.2 → XP_014991210.2  E3 ubiquitin-protein ligase TRIM38

    UniProtKB/TrEMBL
    A0A5F7ZAF8, G7MQW0
    Related
    ENSMMUP00000071320.1, ENSMMUT00000099990.1
    Conserved Domains (4) summary
    smart00336
    Location:88 → 129
    BBOX; B-Box-type zinc finger
    COG1196
    Location:135 → 254
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    cd15815
    Location:280 → 461
    SPRY_PRY_TRIM38; PRY/SPRY domain of tripartite motif-binding protein 38 (TRIM38), also known as Ring finger protein 15 (RNF15)
    cd16600
    Location:13 → 63
    RING-HC_TRIM38_C-IV; RING finger, HC subclass, found in tripartite motif-containing protein 38 (TRIM38) and similar proteins

  2. XM_015135722.2 → XP_014991208.2  E3 ubiquitin-protein ligase TRIM38

    UniProtKB/TrEMBL
    A0A5F7ZAF8, G7MQW0
    Related
    ENSMMUP00000062546.1, ENSMMUT00000101169.1
    Conserved Domains (4) summary
    smart00336
    Location:88 → 129
    BBOX; B-Box-type zinc finger
    COG1196
    Location:135 → 254
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    cd15815
    Location:280 → 461
    SPRY_PRY_TRIM38; PRY/SPRY domain of tripartite motif-binding protein 38 (TRIM38), also known as Ring finger protein 15 (RNF15)
    cd16600
    Location:13 → 63
    RING-HC_TRIM38_C-IV; RING finger, HC subclass, found in tripartite motif-containing protein 38 (TRIM38) and similar proteins

  3. XM_028847783.1 → XP_028703616.1  E3 ubiquitin-protein ligase TRIM38

    UniProtKB/TrEMBL
    A0A5F7ZAF8, G7MQW0
    Conserved Domains (4) summary
    smart00336
    Location:88 → 129
    BBOX; B-Box-type zinc finger
    COG1196
    Location:135 → 254
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    cd15815
    Location:280 → 461
    SPRY_PRY_TRIM38; PRY/SPRY domain of tripartite motif-binding protein 38 (TRIM38), also known as Ring finger protein 15 (RNF15)
    cd16600
    Location:13 → 63
    RING-HC_TRIM38_C-IV; RING finger, HC subclass, found in tripartite motif-containing protein 38 (TRIM38) and similar proteins

  4. XM_015135723.2 → XP_014991209.2  E3 ubiquitin-protein ligase TRIM38

    UniProtKB/TrEMBL
    A0A5F7ZAF8, G7MQW0
    Conserved Domains (4) summary
    smart00336
    Location:88 → 129
    BBOX; B-Box-type zinc finger
    COG1196
    Location:135 → 254
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    cd15815
    Location:280 → 461
    SPRY_PRY_TRIM38; PRY/SPRY domain of tripartite motif-binding protein 38 (TRIM38), also known as Ring finger protein 15 (RNF15)
    cd16600
    Location:13 → 63
    RING-HC_TRIM38_C-IV; RING finger, HC subclass, found in tripartite motif-containing protein 38 (TRIM38) and similar proteins
Nucleotide Protein
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