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Snhg10 small nucleolar RNA host gene 10 [ Mus musculus (house mouse) ]

Gene ID: 69434, updated on 2-Nov-2024

Summary

Official Symbol
Snhg10provided by MGI
Official Full Name
small nucleolar RNA host gene 10provided by MGI
Primary source
MGI:MGI:1916684
See related
AllianceGenome:MGI:1916684
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
1700026B20Rik
Summary
Orthologous to human SNHG10 (small nucleolar RNA host gene 10). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Ubiquitous expression in whole brain E14.5 (RPKM 3.5), CNS E18 (RPKM 2.7) and 27 other tissues See more
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Genomic context

See Snhg10 in Genome Data Viewer
Location:
12 E; 12 55.04 cM
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 12 NC_000078.7 (104996876..104998538, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 12 NC_000078.6 (105030617..105032279, complement)

Chromosome 12 - NC_000078.7Genomic Context describing neighboring genes Neighboring gene calmin Neighboring gene predicted gene, 53761 Neighboring gene STARR-seq mESC enhancer starr_33155 Neighboring gene spectrin repeat containing, nuclear envelope family member 3 Neighboring gene STARR-positive B cell enhancer ABC_E1453 Neighboring gene STARR-seq mESC enhancer starr_33158 Neighboring gene CapStarr-seq enhancer MGSCv37_chr12:106251266-106251483 Neighboring gene predicted gene, 31742 Neighboring gene STARR-positive B cell enhancer ABC_E7177 Neighboring gene small Cajal body-specific RNA 13 Neighboring gene microRNA 3069 Neighboring gene predicted gene, 46374 Neighboring gene glutaredoxin 5 Neighboring gene predicted gene, 31884

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

General gene information

Markers

Other Names

  • small nucleolar RNA host gene (non-protein coding) 10

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_003145.3 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AK006372, BX524976

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000078.7 Reference GRCm39 C57BL/6J

    Range
    104996876..104998538 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)