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1700008K24Rik RIKEN cDNA 1700008K24 gene [ Mus musculus (house mouse) ]

Gene ID: 69311, updated on 22-Oct-2024

Summary

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Official Symbol
1700008K24Rikprovided by MGI
Official Full Name
RIKEN cDNA 1700008K24 geneprovided by MGI
Primary source
MGI:MGI:1916561
See related
Ensembl:ENSMUSG00000101012 AllianceGenome:MGI:1916561
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Expression
Restricted expression toward testis adult (RPKM 232.4) See more
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Genomic context

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See 1700008K24Rik in Genome Data Viewer
Location:
17 C; 17 24.78 cM
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 17 NC_000083.7 (49419292..49420561, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 17 NC_000083.6 (49112264..49113533, complement)

Chromosome 17 - NC_000083.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_42758 Neighboring gene predicted gene, 24071 Neighboring gene STARR-seq mESC enhancer starr_42759 Neighboring gene STARR-seq mESC enhancer starr_42760 Neighboring gene STARR-seq mESC enhancer starr_42761 Neighboring gene STARR-seq mESC enhancer starr_42762 Neighboring gene STARR-seq mESC enhancer starr_42763 Neighboring gene leucine rich repeat and fibronectin type III domain containing 2 Neighboring gene STARR-seq mESC enhancer starr_42766 Neighboring gene STARR-seq mESC enhancer starr_42768 Neighboring gene predicted gene, 30475 Neighboring gene antigenic determinant of rec-A protein pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Characterization of the piRNA complex from rat testes. Lau NC, et al. Science, 2006 Jul 21. PMID 16778019
  2. A germline-specific class of small RNAs binds mammalian Piwi proteins. Girard A, et al. Nature, 2006 Jul 13. PMID 16751776
  3. The Vertebrate Genome Annotation browser 10 years on. Harrow JL, et al. Nucleic Acids Res, 2014 Jan. PMID 24316575, Free PMC Article
  4. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  5. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636

See all (10) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_038141.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript.
    Source sequence(s)
    AC154247, CF104157
    Related
    ENSMUST00000186479.3

  2. NR_038142.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) includes an additional splice site in the 5' region, compared to variant 1.
    Source sequence(s)
    AC154247, CF982619
    Related
    ENSMUST00000185974.8

  3. NR_038143.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) includes an additional splice site in the 5' region, compared to variant 1.
    Source sequence(s)
    AC154247
    Related
    ENSMUST00000187177.8

  4. NR_038144.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (4) uses an alternate splice site compared to variant 1.
    Source sequence(s)
    AC154247
    Related
    ENSMUST00000188649.3

  5. NR_038145.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (5) uses an alternate splice site compared to variant 1.
    Source sequence(s)
    AC154247
    Related
    ENSMUST00000190269.3

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000083.7 Reference GRCm39 C57BL/6J

    Range
    49419292..49420561 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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