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eIF4A eukaryotic translation initiation factor 4A [ Bombyx mori (domestic silkworm) ]

Gene ID: 692781, updated on 15-May-2024

Summary

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Gene symbol
eIF4A
Gene description
eukaryotic translation initiation factor 4A
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bombyx mori
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Bombycoidea; Bombycidae; Bombycinae; Bombyx
Also known as
Eif-4a
Orthologs
fruit fly all
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Genomic context

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See eIF4A in Genome Data Viewer
Location:
chromosome: 4
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_01 current ASM3026992v2 (GCF_030269925.1) 4 NC_085110.1 (11867375..11873222, complement)
103 previous assembly Bmori_2016v1.0 (GCF_014905235.1) 4 NC_051361.1 (11646818..11651615, complement)

Chromosome 4 - NC_085110.1Genomic Context describing neighboring genes Neighboring gene Schwannomin interacting protein 1 Neighboring gene activating signal cointegrator 1 complex subunit 1 Neighboring gene uncharacterized LOC101741263 Neighboring gene uncharacterized LOC101741121 Neighboring gene profilin Neighboring gene uncharacterized LOC134198793

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Large scale full-length cDNA sequencing reveals a unique genomic landscape in a lepidopteran model insect, Bombyx mori. Suetsugu Y, et al. G3 (Bethesda), 2013 Sep 4. PMID 23821615, Free PMC Article
  2. Transcriptomic analysis of developmental features of Bombyx mori wing disc during metamorphosis. Ou J, et al. BMC Genomics, 2014 Sep 27. PMID 25261999, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA helicase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
eukaryotic translation initiation factor 4A
Names
translation initiation factor 4A
NP_001037376.1
XP_012549898.1
XP_062533067.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001043911.1 → NP_001037376.1  eukaryotic translation initiation factor 4A

    See identical proteins and their annotated locations for NP_001037376.1

    Status: PROVISIONAL

    Source sequence(s)
    DQ150250
    UniProtKB/TrEMBL
    Q285R3
    Conserved Domains (3) summary
    PTZ00424
    Location:21 → 420
    PTZ00424; helicase 45; Provisional
    cd00268
    Location:49 → 249
    DEADc; DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif ...
    pfam00271
    Location:271 → 375
    Helicase_C; Helicase conserved C-terminal domain

RefSeqs of Annotated Genomes: GCF_030269925.1-RS_2024_01

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3026992v2 Primary Assembly

Genomic

  1. NC_085110.1 Reference ASM3026992v2 Primary Assembly

    Range
    11867375..11873222 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012694444.4 → XP_012549898.1  eukaryotic translation initiation factor 4A isoform X1

    See identical proteins and their annotated locations for XP_012549898.1

    UniProtKB/TrEMBL
    Q1HPW2
    Conserved Domains (1) summary
    PTZ00424
    Location:21 → 420
    PTZ00424; helicase 45; Provisional

  2. XM_062677083.1 → XP_062533067.1  eukaryotic translation initiation factor 4A isoform X2

RNA

  1. XR_001139998.4 RNA Sequence

  2. XR_009977098.1 RNA Sequence

  3. XR_002431283.3 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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