U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

ftr81 finTRIM family, member 81 [ Danio rerio (zebrafish) ]

Gene ID: 692330, updated on 18-Sep-2024

Summary

Go to the top of the page Help
Official Symbol
ftr81provided by ZNC
Official Full Name
finTRIM family, member 81provided by ZNC
Primary source
ZFIN:ZDB-GENE-060810-168
See related
Ensembl:ENSDARG00000109055 AllianceGenome:ZFIN:ZDB-GENE-060810-168
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
im:7161960; zgc:136302
Summary
Predicted to enable zinc ion binding activity. Orthologous to human RNF135 (ring finger protein 135). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See ftr81 in Genome Data Viewer
Location:
chromosome: 13
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 13 NC_007124.7 (33462139..33468710)
105 previous assembly GRCz10 (GCF_000002035.5) 13 NC_007124.6 (33332637..33338260)

Chromosome 13 - NC_007124.7Genomic Context describing neighboring genes Neighboring gene BRF1 general transcription factor IIIB subunit a Neighboring gene BTB (POZ) domain containing 6a Neighboring gene finTRIM family, member 80 Neighboring gene jagged canonical Notch ligand 2a Neighboring gene uncharacterized LOC137487421

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. FTR83, a Member of the Large Fish-Specific finTRIM Family, Triggers IFN Pathway and Counters Viral Infection. Langevin C, et al. Front Immunol, 2017. PMID 28603526, Free PMC Article
  2. A large new subset of TRIM genes highly diversified by duplication and positive selection in teleost fish. van der Aa LM, et al. BMC Biol, 2009 Feb 5. PMID 19196451, Free PMC Article
  3. Origin and evolution of TRIM proteins: new insights from the complete TRIM repertoire of zebrafish and pufferfish. Boudinot P, et al. PLoS One, 2011. PMID 21789205, Free PMC Article
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  5. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
enables molecular_function ND
No biological Data available
more info
  
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

Go to the top of the page Help
Preferred Names
finTRIM family, member 81

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001346164.1 → NP_001333093.1  finTRIM family, member 81

    Status: VALIDATED

    Source sequence(s)
    CABZ01072279, CU855931
    UniProtKB/TrEMBL
    A0A286Y945, A0A8M1PAD5
    Related
    ENSDARP00000143670.1, ENSDART00000177841.2

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007124.7 Reference GRCz11 Primary Assembly

    Range
    33462139..33468710
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_068212938.1 → XP_068069039.1  finTRIM family, member 81 isoform X1

  2. XM_068212940.1 → XP_068069041.1  finTRIM family, member 81 isoform X1

  3. XM_068212939.1 → XP_068069040.1  finTRIM family, member 81 isoform X1

  4. XM_068212937.1 → XP_068069038.1  finTRIM family, member 81 isoform X1

RNA

  1. XR_011005847.1 RNA Sequence

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001045296.1: Suppressed sequence

    Description
    NM_001045296.1: This RefSeq was removed because currently there is insufficient support for the transcript and the protein.
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials