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Rpl17l5 ribosomal protein L17 like 5 [ Rattus norvegicus (Norway rat) ]

Gene ID: 691392, updated on 17-Aug-2024

Summary

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Official Symbol
Rpl17l5provided by RGD
Official Full Name
ribosomal protein L17 like 5provided by RGD
Primary source
RGD:1585025
See related
AllianceGenome:RGD:1585025
Gene type
protein coding
RefSeq status
MODEL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Expression
Biased expression in Spleen (RPKM 338.9), Thymus (RPKM 317.6) and 9 other tissues See more
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Genomic context

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See Rpl17l5 in Genome Data Viewer
Location:
10q22
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 10 NC_086028.1 (45855949..45862439, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 10 NC_051345.1 (45362012..45364050, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 10 NC_005109.4 (46923410..46924341, complement)

Chromosome 10 - NC_086028.1Genomic Context describing neighboring genes Neighboring gene developmentally regulated GTP binding protein 2 Neighboring gene myosin XVA Neighboring gene alkB homolog 5, RNA demethylase Neighboring gene U7 small nuclear RNA Neighboring gene LLGL scribble cell polarity complex component 1 Neighboring gene small nucleolar RNA SNORA15 Neighboring gene FLII, actin remodeling protein

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General protein information

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Preferred Names
large ribosomal subunit protein uL22-like
Names
60S ribosomal protein L17-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086028.1 Reference GRCr8

    Range
    45855949..45862439 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001075994.8 → XP_001075994.3  large ribosomal subunit protein uL22-like

    See identical proteins and their annotated locations for XP_001075994.3

    UniProtKB/TrEMBL
    D3Z9G9
    Conserved Domains (1) summary
    PTZ00178
    Location:1 → 166
    PTZ00178; 60S ribosomal protein L17; Provisional
Nucleotide Protein Strain
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