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Fam25a family with sequence similarity 25, member A [ Mus musculus (house mouse) ]

Gene ID: 69134, updated on 2-Nov-2024

Summary

Official Symbol
Fam25aprovided by MGI
Official Full Name
family with sequence similarity 25, member Aprovided by MGI
Primary source
MGI:MGI:1916384
See related
Ensembl:ENSMUSG00000043681 AllianceGenome:MGI:1916384
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Fam25; Fam25c; 2200001I15Rik
Summary
Is expressed in submandibular gland primordium and vibrissa. Orthologous to several human genes including FAM25A (family with sequence similarity 25 member A). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in bladder adult (RPKM 211.4), liver adult (RPKM 32.3) and 1 other tissue See more
Orthologs
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Genomic context

See Fam25a in Genome Data Viewer
Location:
14 B; 14 20.81 cM
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 14 NC_000080.7 (34073842..34080296, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 14 NC_000080.6 (34351882..34358339, complement)

Chromosome 14 - NC_000080.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_36372 Neighboring gene glutamate dehydrogenase 1 Neighboring gene STARR-seq mESC enhancer starr_36373 Neighboring gene B-cell CLL/lymphoma 7C pseudogene Neighboring gene STARR-seq mESC enhancer starr_36378 Neighboring gene predicted gene, 53843 Neighboring gene predicted gene, 41131

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (2) 

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 

General protein information

Preferred Names
protein FAM25A; protein FAM25C
Names
family with sequence similarity 25, member C
protein FAM25

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_183278.3NP_899101.1  protein FAM25A

    See identical proteins and their annotated locations for NP_899101.1

    Status: VALIDATED

    Source sequence(s)
    AC160930
    Consensus CDS
    CCDS36875.1
    UniProtKB/Swiss-Prot
    B2RVA0, Q8CF02
    Related
    ENSMUSP00000063140.6, ENSMUST00000052126.6
    Conserved Domains (1) summary
    pfam15825
    Location:2488
    FAM25; FAM25 family

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000080.7 Reference GRCm39 C57BL/6J

    Range
    34073842..34080296 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030247990.1XP_030103850.1  protein FAM25C isoform X1

    Conserved Domains (1) summary
    pfam15825
    Location:1579
    FAM25; FAM25 family