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Them7 thioesterase superfamily member 7 [ Rattus norvegicus (Norway rat) ]

Gene ID: 691083, updated on 2-Nov-2024

Summary

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Official Symbol
Them7provided by RGD
Official Full Name
thioesterase superfamily member 7provided by RGD
Primary source
RGD:1588621
See related
EnsemblRapid:ENSRNOG00000013437 AllianceGenome:RGD:1588621
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1306990
Summary
Predicted to enable fatty acyl-CoA hydrolase activity. [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in Liver (RPKM 99.1), Kidney (RPKM 41.4) and 6 other tissues See more
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Genomic context

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See Them7 in Genome Data Viewer
Location:
3q33
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 3 NC_086021.1 (112120929..112358940)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 3 NC_051338.1 (91666144..91834783)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 3 NC_005102.4 (95312809..95398594)

Chromosome 3 - NC_086021.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC134486416 Neighboring gene WT1 transcription factor Neighboring gene ribosomal protein L6, pseudogene 11 Neighboring gene reticulocalbin 1 Neighboring gene paired box 6 Neighboring gene elongator acetyltransferase complex subunit 4 Neighboring gene ribosomal protein L35A like 6

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Gene and alternative splicing annotation with AIR. Florea L, et al. Genome Res, 2005 Jan. PMID 15632090, Free PMC Article
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables fatty acyl-CoA hydrolase activity IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
uncharacterized protein LOC691083

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001144862.2 → NP_001138334.1  uncharacterized protein LOC691083

    See identical proteins and their annotated locations for NP_001138334.1

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000003
    UniProtKB/TrEMBL
    A0A0G2JYZ9, A6HNW4, D4AEL0
    Related
    ENSRNOP00000017952.4, ENSRNOT00000017952.8
    Conserved Domains (1) summary
    COG0824
    Location:33 → 198
    FadM; Acyl-CoA thioesterase FadM [Lipid transport and metabolism]

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086021.1 Reference GRCr8

    Range
    112120929..112358940
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063284592.1 → XP_063140662.1  uncharacterized protein LOC691083 isoform X2

  2. XM_063284591.1 → XP_063140661.1  uncharacterized protein LOC691083 isoform X3

  3. XM_063284590.1 → XP_063140660.1  uncharacterized protein LOC691083 isoform X2

  4. XM_063284588.1 → XP_063140658.1  uncharacterized protein LOC691083 isoform X1

    UniProtKB/TrEMBL
    A6HNW4, D4AEL0

  5. XM_063284589.1 → XP_063140659.1  uncharacterized protein LOC691083 isoform X1

    UniProtKB/TrEMBL
    A6HNW4, D4AEL0
Nucleotide Protein Strain
Heading Accession and Version

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