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CBG29111 Protein CBG29111 [ Caenorhabditis briggsae ]

Gene ID: 68920369, updated on 10-Oct-2024

Summary

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Gene symbol
CBG29111
Gene description
Protein CBG29111
Locus tag
CBG_29111
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Caenorhabditis briggsae (strain: AF16)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
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Genomic context

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See CBG29111 in Genome Data Viewer
Location:
chromosome: IV
Exon count:
2
Sequence:
Chromosome: IV; NC_013487.2 (17396130..17396622, complement)

Chromosome IV - NC_013487.2Genomic Context describing neighboring genes Neighboring gene Protein CBG13561 Neighboring gene Protein CBG13562 Neighboring gene Protein CBR-COL-107 Neighboring gene Protein CBG13564 Neighboring gene Protein CBG13565

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_013487.2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome sequence of Caenorhabditis briggsae: a platform for comparative genomics. Stein LD, et al. PLoS Biol, 2003 Nov. PMID 14624247, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription cis-regulatory region binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
Protein CBG29111
XP_045100820.1
  • contains similarity to Interpro domain IPR007087 (Zinc finger, C2H2);
    Partially confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_013487.2 Reference assembly

    Range
    17396130..17396622 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_045236420.1 → XP_045100820.1  Protein CBG29111 [Caenorhabditis briggsae]

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    E3CU43
    Conserved Domains (1) summary
    COG5236
    Location:25 → 111
    COG5236; Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Nucleotide Protein
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