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CBG29108 Protein CBG29108 [ Caenorhabditis briggsae ]

Gene ID: 68920367, updated on 6-Jun-2024

Summary

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Gene symbol
CBG29108
Gene description
Protein CBG29108
Locus tag
CBG_29108
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Caenorhabditis briggsae (strain: AF16)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
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Genomic context

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See CBG29108 in Genome Data Viewer
Location:
chromosome: II
Exon count:
3
Sequence:
Chromosome: II; NC_013486.2 (8373146..8374410, complement)

Chromosome II - NC_013486.2Genomic Context describing neighboring genes Neighboring gene Protein CBG02869 Neighboring gene tRNA Neighboring gene Protein CBR-AGE-1 Neighboring gene Protein CBG25586 Neighboring gene Protein CBG02866

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_013486.2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome sequence of Caenorhabditis briggsae: a platform for comparative genomics. Stein LD, et al. PLoS Biol, 2003 Nov. PMID 14624247, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription coregulator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of core mediator complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of mediator complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
Protein CBG29108
XP_045100792.1
  • contains similarity to Pfam domain PF10232 Mediator of RNA polymerase II transcription complex subunit 8 contains similarity to Interpro domains IPR019364 (Mediator complex, subunit Med8, fungi/metazoa), IPR016160 (Aldehyde dehydrogenase, conserved site);
    Predicted

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_013486.2 Reference assembly

    Range
    8373146..8374410 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_045242379.1 → XP_045100792.1  Protein CBG29108 [Caenorhabditis briggsae]

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    E3CTW6, P0C5E6
    UniProtKB/TrEMBL
    A0AAE9DL90
    Conserved Domains (2) summary
    pfam10232
    Location:17 → 239
    Med8; Mediator of RNA polymerase II transcription complex subunit 8
    cl41773
    Location:216 → 285
    SP1-4_N; N-terminal domain of transcription factor Specificity Proteins (SP) 1-4
Nucleotide Protein
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