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Ccdc149 coiled-coil domain containing 149 [ Rattus norvegicus (Norway rat) ]

Gene ID: 688939, updated on 10-Oct-2024

Summary

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Official Symbol
Ccdc149provided by RGD
Official Full Name
coiled-coil domain containing 149provided by RGD
Primary source
RGD:1582968
See related
EnsemblRapid:ENSRNOG00000024454 AllianceGenome:RGD:1582968
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary
Orthologous to human CCDC149 (coiled-coil domain containing 149). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in Brain (RPKM 60.2), Heart (RPKM 47.9) and 9 other tissues See more
Orthologs
human mouse all
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Genomic context

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See Ccdc149 in Genome Data Viewer
Location:
14q11
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 14 NC_086032.1 (62722567..62817778)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 14 NC_051349.1 (58509583..58605017)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 14 NC_005113.4 (60857924..60953504)

Chromosome 14 - NC_086032.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC134481905 Neighboring gene uncharacterized LOC134481755 Neighboring gene superoxide dismutase 3 Neighboring gene small nucleolar RNA SNORA70

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

General protein information

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Preferred Names
coiled-coil domain containing 149; coiled-coil domain-containing protein 149

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001432958.1 → NP_001419887.1  coiled-coil domain containing 149 isoform 1

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000014
    UniProtKB/TrEMBL
    F1LVF5

  2. NM_001432959.1 → NP_001419888.1  coiled-coil domain containing 149 isoform 2

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000014
    UniProtKB/TrEMBL
    A0A8I6GFS3

  3. NM_001432960.1 → NP_001419889.1  coiled-coil domain containing 149 isoform 3

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000014

  4. NM_001432961.1 → NP_001419890.1  coiled-coil domain containing 149 isoform 4

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000014

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086032.1 Reference GRCr8

    Range
    62722567..62817778
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006251034.5 → XP_006251096.1  coiled-coil domain-containing protein 149 isoform X2

    Related
    ENSRNOP00000094579.2, ENSRNOT00000097645.2
    Conserved Domains (2) summary
    pfam09789
    Location:21 → 333
    DUF2353; Uncharacterized coiled-coil protein (DUF2353)
    cl00459
    Location:86 → 206
    MIT_CorA-like; metal ion transporter CorA-like divalent cation transporter superfamily

  2. XM_039092757.2 → XP_038948685.1  coiled-coil domain-containing protein 149 isoform X1

    Related
    ENSRNOP00000029437.4, ENSRNOT00000034411.6
    Conserved Domains (1) summary
    pfam09789
    Location:21 → 333
    DUF2353; Uncharacterized coiled-coil protein (DUF2353)

  3. XM_063273760.1 → XP_063129830.1  coiled-coil domain-containing protein 149 isoform X3

    Related
    ENSRNOP00000088058.2, ENSRNOT00000118912.2

  4. XM_063273761.1 → XP_063129831.1  coiled-coil domain-containing protein 149 isoform X4

Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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Chemical Information
Molecular Biology Databases
Research Materials