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Zmym1 zinc finger, MYM domain containing 1 [ Mus musculus (house mouse) ]

Gene ID: 68310, updated on 28-Oct-2024

Summary

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Official Symbol
Zmym1provided by MGI
Official Full Name
zinc finger, MYM domain containing 1provided by MGI
Primary source
MGI:MGI:1915560
See related
Ensembl:ENSMUSG00000043872 AllianceGenome:MGI:1915560
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
5830412B09Rik
Summary
Orthologous to human ZMYM1 (zinc finger MYM-type containing 1). [provided by Alliance of Genome Resources, Oct 2024]
Expression
Broad expression in CNS E11.5 (RPKM 5.6), CNS E18 (RPKM 5.5) and 25 other tissues See more
Orthologs
human all
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Genomic context

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See Zmym1 in Genome Data Viewer
Location:
4 D2.2; 4 61.22 cM
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 4 NC_000070.7 (126940887..126954968, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 4 NC_000070.6 (127047094..127061176, complement)

Chromosome 4 - NC_000070.7Genomic Context describing neighboring genes Neighboring gene expressed sequence AU040320 Neighboring gene STARR-positive B cell enhancer ABC_E4667 Neighboring gene predicted gene, 25604 Neighboring gene zinc finger, MYM-type 4 Neighboring gene STARR-seq mESC enhancer starr_11411 Neighboring gene STARR-positive B cell enhancer ABC_E7989 Neighboring gene STARR-seq mESC enhancer starr_11413 Neighboring gene STARR-seq mESC enhancer starr_11417 Neighboring gene STARR-seq mESC enhancer starr_11418 Neighboring gene STARR-positive B cell enhancer ABC_E9012 Neighboring gene splicing factor proline/glutamine rich (polypyrimidine tract binding protein associated) Neighboring gene STARR-seq mESC enhancer starr_11419 Neighboring gene STARR-seq mESC enhancer starr_11420 Neighboring gene 60S ribosomal protein L21 pseudogene Neighboring gene zinc finger, MYM-type 6 Neighboring gene STARR-seq mESC enhancer starr_11421 Neighboring gene predicted gene, 25600 Neighboring gene transmembrane protein 35B

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Tagging genes with cassette-exchange sites. Cobellis G, et al. Nucleic Acids Res, 2005 Mar 1. PMID 15741177, Free PMC Article
  2. Construction of long-transcript enriched cDNA libraries from submicrogram amounts of total RNAs by a universal PCR amplification method. Piao Y, et al. Genome Res, 2001 Sep. PMID 11544199, Free PMC Article
  3. Database resources of the National Center for Biotechnology Information. Wheeler DL, et al. Nucleic Acids Res, 2001 Jan 1. PMID 11125038, Free PMC Article
  4. A large-scale, gene-driven mutagenesis approach for the functional analysis of the mouse genome. Hansen J, et al. Proc Natl Acad Sci U S A, 2003 Aug 19. PMID 12904583, Free PMC Article
  5. BayGenomics: a resource of insertional mutations in mouse embryonic stem cells. Stryke D, et al. Nucleic Acids Res, 2003 Jan 1. PMID 12520002, Free PMC Article

See all (16) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (2) 

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  

General protein information

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Preferred Names
zinc finger MYM-type protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001356311.1 → NP_001343240.1  zinc finger MYM-type protein 1 isoform 2

    Status: VALIDATED

    Source sequence(s)
    AK016783, AK035618, AK167508, AL606985, CF164697
    UniProtKB/TrEMBL
    Q6PG63
    Conserved Domains (2) summary
    pfam05699
    Location:798 → 887
    Dimer_Tnp_hAT; hAT family C-terminal dimerisation region
    pfam14291
    Location:310 → 490
    DUF4371; Domain of unknown function (DUF4371)

  2. NM_026670.5 → NP_080946.3  zinc finger MYM-type protein 1 isoform 1

    See identical proteins and their annotated locations for NP_080946.3

    Status: VALIDATED

    Source sequence(s)
    AK016783, AK035618, AK167508, AL606985, CF164697
    Consensus CDS
    CCDS18663.1
    UniProtKB/TrEMBL
    Q3TJB1, Q6PG63
    Related
    ENSMUSP00000101708.3, ENSMUST00000106102.9
    Conserved Domains (3) summary
    pfam05699
    Location:870 → 959
    Dimer_Tnp_hAT; hAT family C-terminal dimerization region
    pfam06467
    Location:57 → 96
    zf-FCS; MYM-type Zinc finger with FCS sequence motif
    pfam14291
    Location:387 → 568
    DUF4371; Domain of unknown function (DUF4371)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000070.7 Reference GRCm39 C57BL/6J

    Range
    126940887..126954968 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030253735.2 → XP_030109595.1  zinc finger MYM-type protein 1 isoform X1

    UniProtKB/TrEMBL
    Q6PG63
    Conserved Domains (2) summary
    pfam05699
    Location:728 → 817
    Dimer_Tnp_hAT; hAT family C-terminal dimerization region
    pfam14291
    Location:245 → 426
    DUF4371; Domain of unknown function (DUF4371)
Nucleotide Protein Strain
Heading Accession and Version

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