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Iqcf3 IQ motif containing F3 [ Mus musculus (house mouse) ]

Gene ID: 68265, updated on 28-Oct-2024

Summary

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Official Symbol
Iqcf3provided by MGI
Official Full Name
IQ motif containing F3provided by MGI
Primary source
MGI:MGI:1915515
See related
Ensembl:ENSMUSG00001074846 AllianceGenome:MGI:1915515
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
1700012F17Rik
Expression
Restricted expression toward testis adult (RPKM 95.0) See more
Orthologs
human all
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Genomic context

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See Iqcf3 in Genome Data Viewer
Location:
9 F1; 9 57.74 cM
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 9 NC_000075.7 (106420588..106438825, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 9 NC_000075.6 (106504665..106561646, complement)

Chromosome 9 - NC_000075.7Genomic Context describing neighboring genes Neighboring gene IQ motif containing F1 Neighboring gene IQ motif containing F5 Neighboring gene STARR-positive B cell enhancer mm9_chr9:106434062-106434362 Neighboring gene IQ motif containing F2 Neighboring gene STARR-seq mESC enhancer starr_25155 Neighboring gene IQ motif containing F4 Neighboring gene predicted gene, 39420

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article
  2. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
  3. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  4. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  5. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article

See all (11) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

General protein information

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Preferred Names
IQ domain-containing protein F3
Names
testis-specific IQ motif containing protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001368648.1 → NP_001355577.1  IQ domain-containing protein F3 isoform 1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) encodes the longest isoform (1).
    Source sequence(s)
    AC152452

  2. NM_026645.3 → NP_080921.2  IQ domain-containing protein F3 isoform 2

    See identical proteins and their annotated locations for NP_080921.2

    Status: VALIDATED

    Source sequence(s)
    BC049549
    Consensus CDS
    CCDS40758.1
    UniProtKB/Swiss-Prot
    Q9D498
    UniProtKB/TrEMBL
    A0A7N9VS70
    Related
    ENSMUSP00001068197.1, ENSMUST00010126032.3

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000075.7 Reference GRCm39 C57BL/6J

    Range
    106420588..106438825 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9D498.1 GenPept UniProtKB/Swiss-Prot:Q9D498

Gene LinkOut

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