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Cavin4 caveolae associated 4 [ Mus musculus (house mouse) ]

Gene ID: 68016, updated on 2-Nov-2024

Summary

Official Symbol
Cavin4provided by MGI
Official Full Name
caveolae associated 4provided by MGI
Primary source
MGI:MGI:1915266
See related
Ensembl:ENSMUSG00000028348 AllianceGenome:MGI:1915266
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Murc; 2310039E09Rik
Summary
Predicted to enable GTPase activator activity. Acts upstream of or within positive regulation of transcription by RNA polymerase II. Located in Z disc; caveola; and sarcoplasm. Is expressed in cardiovascular system; lung; and skeletal muscle. Orthologous to human CAVIN4 (caveolae associated protein 4). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in heart adult (RPKM 11.9), CNS E11.5 (RPKM 1.8) and 5 other tissues See more
Orthologs
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Genomic context

See Cavin4 in Genome Data Viewer
Location:
4 B1; 4 26.23 cM
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 4 NC_000070.7 (48663514..48673492)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 4 NC_000070.6 (48663514..48673492)

Chromosome 4 - NC_000070.7Genomic Context describing neighboring genes Neighboring gene Myb/SANT-like DNA-binding domain containing 3 Neighboring gene STARR-seq mESC enhancer starr_10167 Neighboring gene transmembrane protein with EGF-like and two follistatin-like domains 1 Neighboring gene STARR-seq mESC enhancer starr_10171 Neighboring gene predicted gene 12439 Neighboring gene STARR-seq mESC enhancer starr_10174 Neighboring gene predicted gene, 52718 Neighboring gene STARR-seq mESC enhancer starr_10175 Neighboring gene STARR-seq mESC enhancer starr_10176

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (2) 
  • Targeted (2)  1 citation

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Clone Names

  • MGC107637

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables GTPase activator activity ISO
Inferred from Sequence Orthology
more info
PubMed 
Component Evidence Code Pubs
located_in Z disc IDA
Inferred from Direct Assay
more info
PubMed 
located_in Z disc ISO
Inferred from Sequence Orthology
more info
PubMed 
is_active_in caveola IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in caveola IDA
Inferred from Direct Assay
more info
PubMed 
located_in caveola ISO
Inferred from Sequence Orthology
more info
 
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in cytoplasm ISO
Inferred from Sequence Orthology
more info
PubMed 
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 
located_in plasma membrane IDA
Inferred from Direct Assay
more info
PubMed 
located_in plasma membrane ISO
Inferred from Sequence Orthology
more info
 
located_in sarcolemma IEA
Inferred from Electronic Annotation
more info
 
located_in sarcoplasm IDA
Inferred from Direct Assay
more info
PubMed 

General protein information

Preferred Names
caveolae-associated protein 4
Names
cavin 4
muscle-related coiled-coil protein
muscle-restricted coiled-coil protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_026509.4NP_080785.2  caveolae-associated protein 4

    See identical proteins and their annotated locations for NP_080785.2

    Status: VALIDATED

    Source sequence(s)
    AL807771
    Consensus CDS
    CCDS18169.2
    UniProtKB/Swiss-Prot
    A2AMM0, B1PRL4, Q5FW67, Q9CV87, Q9D728
    Related
    ENSMUSP00000030033.5, ENSMUST00000030033.5
    Conserved Domains (1) summary
    pfam15237
    Location:28263
    PTRF_SDPR; PTRF/SDPR family

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000070.7 Reference GRCm39 C57BL/6J

    Range
    48663514..48673492
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)