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Ssxb1 SSX member B1 [ Mus musculus (house mouse) ]

Gene ID: 67985, updated on 18-Sep-2024

Summary

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Official Symbol
Ssxb1provided by MGI
Official Full Name
SSX member B1provided by MGI
Primary source
MGI:MGI:1915235
See related
Ensembl:ENSMUSG00000079705 AllianceGenome:MGI:1915235
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
4930414C09Rik
Summary
Predicted to enable transcription corepressor activity. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in synovial sarcoma. Orthologous to several human genes including SSX1 (SSX family member 1); SSX2B (SSX family member 2B); and SSX3 (SSX family member 3). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Restricted expression toward testis adult (RPKM 1.2) See more
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Genomic context

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See Ssxb1 in Genome Data Viewer
Location:
X A1.1; X 3.81 cM
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) X NC_000086.8 (8279544..8288400)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) X NC_000086.7 (8413305..8422159)

Chromosome X - NC_000086.8Genomic Context describing neighboring genes Neighboring gene SSX member B10 Neighboring gene SSX member B9 Neighboring gene STARR-seq mESC enhancer starr_46696 Neighboring gene SSX member B2 Neighboring gene SSX member B15

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Identification and characterization of mouse SSX genes: a multigene family on the X chromosome with restricted cancer/testis expression. Chen YT, et al. Genomics, 2003 Dec. PMID 14611804
  2. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  3. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  4. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
  5. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article

See all (10) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Component Evidence Code Pubs
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in nucleus ISO
Inferred from Sequence Orthology
more info
  
located_in sperm flagellum ISO
Inferred from Sequence Orthology
more info
  

General protein information

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Preferred Names
synovial sarcoma, X member B1
Names
synovial sarcoma, X member B, breakpoint 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_026492.4 → NP_080768.1  synovial sarcoma, X member B1

    See identical proteins and their annotated locations for NP_080768.1

    Status: VALIDATED

    Source sequence(s)
    BX890632
    Consensus CDS
    CCDS29997.1
    UniProtKB/TrEMBL
    B7ZWB6, Q6XAR6, Q9CPU1
    Related
    ENSMUSP00000037624.4, ENSMUST00000037297.4
    Conserved Domains (2) summary
    pfam09514
    Location:135 → 160
    SSXRD; SSXRD motif
    cl02581
    Location:23 → 78
    KRAB_A-box; KRAB (Kruppel-associated box) domain -A box

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000086.8 Reference GRCm39 C57BL/6J

    Range
    8279544..8288400
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030251492.1 → XP_030107352.1  synovial sarcoma, X member B1 isoform X1

    UniProtKB/TrEMBL
    B7ZWB6, Q6XAR6, Q9CPU1
    Conserved Domains (2) summary
    pfam09514
    Location:135 → 160
    SSXRD; SSXRD motif
    cl02581
    Location:23 → 78
    KRAB_A-box; KRAB (Kruppel-associated box) domain -A box
Nucleotide Protein Strain
Heading Accession and Version

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