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Ube2v1l1 ubiquitin conjugating enzyme E2 V1 like 1 [ Rattus norvegicus (Norway rat) ]

Gene ID: 679539, updated on 2-Nov-2024

Summary

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Official Symbol
Ube2v1l1provided by RGD
Official Full Name
ubiquitin conjugating enzyme E2 V1 like 1provided by RGD
Primary source
RGD:1587144
See related
EnsemblRapid:ENSRNOG00000067007 AllianceGenome:RGD:1587144
Gene type
protein coding
RefSeq status
MODEL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary
Involved in regulation protein catabolic process at postsynapse. Is active in glutamatergic synapse and postsynaptic density. Orthologous to human PEDS1-UBE2V1 (PEDS1-UBE2V1 readthrough) and UBE2V1 (ubiquitin conjugating enzyme E2 V1). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See Ube2v1l1 in Genome Data Viewer
Location:
14p22
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 14 NC_086032.1 (5007958..5009677, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 14 NC_051349.1 (4703243..4704962, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 14 NC_005113.4 (5837634..5839362)

Chromosome 14 - NC_086032.1Genomic Context describing neighboring genes Neighboring gene U6 spliceosomal RNA Neighboring gene guanylate binding protein 6, pseudogene 1 Neighboring gene guanylate binding protein 6, pseudogene 3 Neighboring gene guanylate binding protein family member 6 Neighboring gene ATP-binding cassette, subfamily G (WHITE), member 3 Neighboring gene U6 spliceosomal RNA

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Proteasome-independent polyubiquitin linkage regulates synapse scaffolding, efficacy, and plasticity. Ma Q, et al. Proc Natl Acad Sci U S A, 2017 Oct 10. PMID 28973854, Free PMC Article
  2. Analysis of oxygen/glucose-deprivation-induced changes in SUMO3 conjugation using SILAC-based quantitative proteomics. Yang W, et al. J Proteome Res, 2012 Feb 3. PMID 22082260, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by RGD

Process Evidence Code Pubs
involved_in regulation protein catabolic process at postsynapse IDA
Inferred from Direct Assay
more info
 PubMed 
involved_in regulation protein catabolic process at postsynapse IEP
Inferred from Expression Pattern
more info
 PubMed 
involved_in regulation protein catabolic process at postsynapse IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
is_active_in glutamatergic synapse IDA
Inferred from Direct Assay
more info
 PubMed 
is_active_in glutamatergic synapse IMP
Inferred from Mutant Phenotype
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
  
is_active_in postsynaptic density IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
ubiquitin-conjugating enzyme E2 variant 1
Names
ubiquitin-conjugating enzyme E2 variant 1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086032.1 Reference GRCr8

    Range
    5007958..5009677 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003751324.6 → XP_003751372.2  ubiquitin-conjugating enzyme E2 variant 1

    Related
    ENSRNOP00000087162.2, ENSRNOT00000057117.4
Nucleotide Protein Strain
Heading Accession and Version

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