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SCARNA4 small Cajal body-specific RNA 4 [ Homo sapiens (human) ]

Gene ID: 677771, updated on 28-Oct-2024

Summary

Official Symbol
SCARNA4provided by HGNC
Official Full Name
small Cajal body-specific RNA 4provided by HGNC
Primary source
HGNC:HGNC:32560
See related
Ensembl:ENSG00000281394 AllianceGenome:HGNC:32560
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
ACA26
Summary
Predicted to be involved in RNA processing. Predicted to be located in Cajal body and nucleolus. [provided by Alliance of Genome Resources, Oct 2024]
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Genomic context

See SCARNA4 in Genome Data Viewer
Location:
1q22
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (155925958..155926086, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (155064092..155064220, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (155895749..155895877, complement)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene Ras like without CAAX 1 Neighboring gene KH domain containing 4, pre-mRNA splicing factor Neighboring gene small nucleolar RNA, H/ACA box 80E Neighboring gene MED14-independent group 3 enhancer GRCh37_chr1:155903710-155904909 Neighboring gene uncharacterized LOC107985207 Neighboring gene Sharpr-MPRA regulatory region 2022 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:155911483-155911982 Neighboring gene relaxin family peptide/INSL5 receptor 4

Genomic regions, transcripts, and products

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Other Names

  • ACA26 scaRNA

Gene Ontology Provided by GOA

Process Evidence Code Pubs
involved_in RNA processing IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in Cajal body IEA
Inferred from Electronic Annotation
more info
 
located_in nucleolus IEA
Inferred from Electronic Annotation
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_003005.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AJ609483
    Related
    ENST00000625402.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    155925958..155926086 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    155064092..155064220 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)