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zgc:136864 zgc:136864 [ Danio rerio (zebrafish) ]

Gene ID: 677749, updated on 12-Sep-2024

Summary

Official Symbol
zgc:136864provided by ZNC
Official Full Name
zgc:136864provided by ZNC
Primary source
ZFIN:ZDB-GENE-060331-129
See related
Ensembl:ENSDARG00000059816 AllianceGenome:ZFIN:ZDB-GENE-060331-129
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Summary
Orthologous to human C19orf53 (chromosome 19 open reading frame 53). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
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Genomic context

See zgc:136864 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 1 NC_007112.7 (55007272..55008890, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 1 NC_007112.6 (54329621..54331239, complement)

Chromosome 1 - NC_007112.7Genomic Context describing neighboring genes Neighboring gene KH-type splicing regulatory protein Neighboring gene solute carrier family 25 member 23a Neighboring gene si:ch211-196h16.12 Neighboring gene VPS54 subunit of GARP complex Neighboring gene pellino E3 ubiquitin protein ligase 1a

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

General gene information

Markers

Clone Names

  • MGC136864

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 

General protein information

Preferred Names
UPF0390 protein zgc136864
Names
leydig cell tumor 10 kDa protein homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001040044.2NP_001035133.1  UPF0390 protein zgc136864

    See identical proteins and their annotated locations for NP_001035133.1

    Status: VALIDATED

    Source sequence(s)
    BC114294, EH439972, FQ323126
    UniProtKB/Swiss-Prot
    Q24JV4
    Related
    ENSDARP00000078007.5, ENSDART00000083572.6
    Conserved Domains (1) summary
    pfam09495
    Location:181
    DUF2462; Protein of unknown function (DUF2462)

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007112.7 Reference GRCz11 Primary Assembly

    Range
    55007272..55008890 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)