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Gm12171 predicted gene 12171 [ Mus musculus (house mouse) ]

Gene ID: 675689, updated on 17-Aug-2024

Summary

Official Symbol
Gm12171provided by MGI
Official Full Name
predicted gene 12171provided by MGI
Primary source
MGI:MGI:3649516
See related
AllianceGenome:MGI:3649516
Gene type
pseudo
RefSeq status
INFERRED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Expression
Low expression observed in reference dataset See more
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Genomic context

See Gm12171 in Genome Data Viewer
Location:
11 B1.1; 11 27.99 cM
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 11 NC_000077.7 (46446782..46448905)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 11 NC_000077.6 (46555955..46558078)

Chromosome 11 - NC_000077.7Genomic Context describing neighboring genes Neighboring gene hepatitis A virus cellular receptor 2 Neighboring gene STARR-seq mESC enhancer starr_29329 Neighboring gene T cell immunoglobulin and mucin domain containing 5 Neighboring gene STARR-seq mESC enhancer starr_29332 Neighboring gene ribosomal protein L9, pseudogene 2 Neighboring gene T cell immunoglobulin and mucin domain containing 6

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

General gene information

Other Names

  • developmental pluripotency associated 1 family member pseudogene

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_068946.1 

    Range
    101..2224
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000077.7 Reference GRCm39 C57BL/6J

    Range
    46446782..46448905
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001163353.1: Suppressed sequence

    Description
    NM_001163353.1: This RefSeq was removed because it is now thought that this gene is a pseudogene.