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Spmip10 sperm microtubule inner protein 10 [ Mus musculus (house mouse) ]

Gene ID: 67343, updated on 19-Sep-2024

Summary

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Official Symbol
Spmip10provided by MGI
Official Full Name
sperm microtubule inner protein 10provided by MGI
Primary source
MGI:MGI:1914593
See related
Ensembl:ENSMUSG00000032900 AllianceGenome:MGI:1914593
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Tex43; Tseg7; 1700065I17Rik
Summary
Acts upstream of or within flagellated sperm motility. Orthologous to human TEX43 (testis expressed 43). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in testis adult (RPKM 20.5), CNS E11.5 (RPKM 11.7) and 11 other tissues See more
Orthologs
human all
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Genomic context

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See Spmip10 in Genome Data Viewer
Location:
18 D3; 18 30.66 cM
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 18 NC_000084.7 (56720690..56727855)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 18 NC_000084.6 (56587609..56594783)

Chromosome 18 - NC_000084.7Genomic Context describing neighboring genes Neighboring gene glutamate-ammonia ligase (glutamine synthetase) pseudogene Neighboring gene aldehyde dehydrogenase family 7, member A1 Neighboring gene STARR-seq mESC enhancer starr_44664 Neighboring gene microRNA 1258 Neighboring gene phosphorylated adaptor for RNA export Neighboring gene predicted gene, 50288 Neighboring gene STARR-seq mESC enhancer starr_44668 Neighboring gene STARR-positive B cell enhancer ABC_E5662 Neighboring gene predicted gene, 41738

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. SPATA33 localizes calcineurin to the mitochondria and regulates sperm motility in mice. Miyata H, et al. Proc Natl Acad Sci U S A, 2021 Aug 31. PMID 34446558, Free PMC Article
  2. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article
  3. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  4. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  5. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article

See all (11) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in flagellated sperm motility IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in flagellated sperm motility IDA
Inferred from Direct Assay
more info
 PubMed 
acts_upstream_of_or_within flagellated sperm motility IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
is_active_in axonemal B tubule inner sheath IDA
Inferred from Direct Assay
more info
 PubMed 
is_active_in cellular_component ND
No biological Data available
more info
  
is_active_in sperm flagellum IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
sperm-associated microtubule inner protein 10
Names
testis expressed 43
testis specific expressed protein 7
testis-expressed protein 43
testis-expressed sequence 43 protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_026099.3 → NP_080375.2  sperm-associated microtubule inner protein 10

    See identical proteins and their annotated locations for NP_080375.2

    Status: PROVISIONAL

    Source sequence(s)
    AK006893
    Consensus CDS
    CCDS29260.1
    UniProtKB/Swiss-Prot
    Q9D9I1
    UniProtKB/TrEMBL
    C9W8M4
    Related
    ENSMUSP00000038152.7, ENSMUST00000035640.13
    Conserved Domains (1) summary
    pfam14983
    Location:3 → 141
    DUF4513; Domain of unknown function (DUF4513)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000084.7 Reference GRCm39 C57BL/6J

    Range
    56720690..56727855
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006526175.5 → XP_006526238.1  sperm-associated microtubule inner protein 10 isoform X1

    Related
    ENSMUSP00000115084.2, ENSMUST00000147775.2
    Conserved Domains (1) summary
    pfam14983
    Location:3 → 99
    DUF4513; Domain of unknown function (DUF4513)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9D9I1.2 GenPept UniProtKB/Swiss-Prot:Q9D9I1

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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