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BBS4 Bardet-Biedl syndrome 4 [ Drosophila simulans ]

Gene ID: 6733932, updated on 22-May-2024

Summary

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Gene symbol
BBS4
Gene description
Bardet-Biedl syndrome 4
Locus tag
Dsimw501_GD10768
See related
EnsemblRapid:LOC6733932
Gene type
protein coding
RefSeq status
MODEL
Organism
Drosophila simulans
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
GD10768; GD10768-PA
Orthologs
fruit fly all
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Genomic context

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See BBS4 in Genome Data Viewer
Location:
chromosome: 2R
Exon count:
10
Annotation release Status Assembly Chr Location
103 current Prin_Dsim_3.1 (GCF_016746395.2) 2R NC_052521.2 (8441751..8446203)
102 previous assembly Prin_Dsim_3.0 (GCF_016746395.1) 2R NC_052521.1 (8441728..8446177)

Chromosome 2R - NC_052521.2Genomic Context describing neighboring genes Neighboring gene probable cytochrome P450 12d1 proximal, mitochondrial Neighboring gene probable cytochrome P450 12d1 proximal, mitochondrial Neighboring gene G-protein coupled receptor dmsr-1 Neighboring gene uncharacterized LOC6733934 Neighboring gene zinc finger protein 316

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Evolution of genes and genomes on the Drosophila phylogeny. Drosophila 12 Genomes Consortium, et al. Nature, 2007 Nov 8. PMID 17994087
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cilium assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein localization to cilium IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in ciliary basal body IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
Bardet-Biedl syndrome 4 protein homolog
Names
Dsim\GD10768
Dsim\GD10768-PA
dsim_GLEANR_10744

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Drosophila simulans Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Prin_Dsim_3.1

Genomic

  1. NC_052521.2 Reference Prin_Dsim_3.1

    Range
    8441751..8446203
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002080940.4 → XP_002080976.2  Bardet-Biedl syndrome 4 protein homolog

    UniProtKB/TrEMBL
    A0A0J9TYP2, B4QB28
    Related
    XP_002080976.2, XM_002080940.4
    Conserved Domains (4) summary
    sd00006
    Location:283 → 311
    TPR; TPR repeat [structural motif]
    pfam13414
    Location:283 → 348
    TPR_11; TPR repeat
    pfam13424
    Location:97 → 175
    TPR_12; Tetratricopeptide repeat
    pfam14559
    Location:190 → 254
    TPR_19; Tetratricopeptide repeat
Nucleotide Protein Strain
Heading Accession and Version

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