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3110040N11Rik RIKEN cDNA 3110040N11 gene [ Mus musculus (house mouse) ]

Gene ID: 67290, updated on 2-Nov-2024

Summary

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Official Symbol
3110040N11Rikprovided by MGI
Official Full Name
RIKEN cDNA 3110040N11 geneprovided by MGI
Primary source
MGI:MGI:1914540
See related
Ensembl:ENSMUSG00000025102 AllianceGenome:MGI:1914540
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary
Predicted to be active in cytoplasm. Orthologous to human C15orf40 (chromosome 15 open reading frame 40). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Ubiquitous expression in CNS E11.5 (RPKM 3.4), bladder adult (RPKM 3.1) and 28 other tissues See more
Orthologs
human all
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Genomic context

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See 3110040N11Rik in Genome Data Viewer
Location:
7 D3; 7 45.71 cM
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (81430031..81439203, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (81780283..81789499, complement)

Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene G2/M-phase specific E3 ubiquitin ligase pseudogene Neighboring gene STARR-positive B cell enhancer ABC_E6568 Neighboring gene RNA guanine-7 methyltransferase activating subunit Neighboring gene STARR-positive B cell enhancer ABC_E4944 Neighboring gene BTB domain containing 1 Neighboring gene STARR-seq mESC enhancer starr_19371 Neighboring gene predicted gene, 32695 Neighboring gene predicted gene, 51491

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. BioID screening of biotinylation sites using the avidin-like protein Tamavidin 2-REV identifies global interactors of stimulator of interferon genes (STING). Motani K, et al. J Biol Chem, 2020 Aug 7. PMID 32554809, Free PMC Article
  2. Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Hansen GM, et al. Genome Res, 2008 Oct. PMID 18799693, Free PMC Article
  3. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article
  4. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548
  5. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article

See all (16) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
UPF0235 protein C15orf40 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001370770.2 → NP_001357699.1  UPF0235 protein C15orf40 homolog isoform 1

    Status: VALIDATED

    Source sequence(s)
    AC102077
    Conserved Domains (1) summary
    pfam02594
    Location:91 → 161
    DUF167; Uncharacterized ACR, YggU family COG1872

  2. NM_001403364.1 → NP_001390293.1  UPF0235 protein C15orf40 homolog isoform 1

    Status: VALIDATED

    Source sequence(s)
    AC102077

  3. NM_001403365.1 → NP_001390294.1  UPF0235 protein C15orf40 homolog isoform 2

    Status: VALIDATED

    Source sequence(s)
    AC102077
    UniProtKB/Swiss-Prot
    Q8K3A3, Q9CRC3

  4. NM_026077.5 → NP_080353.1  UPF0235 protein C15orf40 homolog isoform 2

    See identical proteins and their annotated locations for NP_080353.1

    Status: VALIDATED

    Source sequence(s)
    AC102077
    Consensus CDS
    CCDS40010.1
    UniProtKB/Swiss-Prot
    Q8K3A3, Q9CRC3
    UniProtKB/TrEMBL
    Q3TDI7
    Related
    ENSMUSP00000026092.9, ENSMUST00000026092.9
    Conserved Domains (1) summary
    pfam02594
    Location:36 → 106
    DUF167; Uncharacterized ACR, YggU family COG1872

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000073.7 Reference GRCm39 C57BL/6J

    Range
    81430031..81439203 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9CRC3.1 GenPept UniProtKB/Swiss-Prot:Q9CRC3

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