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UTP13 U3 small nucleolar RNA-associated protein 13 [ Aspergillus chevalieri ]

Gene ID: 66986387, updated on 30-Nov-2023

Summary

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Gene symbol
UTP13
Gene description
U3 small nucleolar RNA-associated protein 13
Locus tag
ACHE_70872S
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Aspergillus chevalieri (strain: M1)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Eurotiomycetes; Eurotiomycetidae; Eurotiales; Aspergillaceae; Aspergillus
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Genomic context

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See UTP13 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
3
Sequence:
Chromosome: 7; NC_057368.1 (2576891..2579927)

Chromosome 7 - NC_057368.1Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene pre-mRNA-splicing factor Spp2 Neighboring gene chromatin modification-related protein Vid21

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_057368.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables U3 snoRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of 90S preribosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleolus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of small-subunit processome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
U3 small nucleolar RNA-associated protein 13
XP_043140551.1
  • COG:A;
    EggNog:ENOG410PHWK;
    InterPro:IPR036322,IPR015943,IPR001680,IPR019775, IPR020472,IPR013934,IPR017986;
    PFAM:PF08625,PF00400;
    go_component: GO:0032040 - small-subunit processome [Evidence IEA];
    go_function: GO:0005515 - protein binding [Evidence IEA];
    go_process: GO:0006364 - rRNA processing [Evidence IEA]

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_057368.1 Reference assembly

    Range
    2576891..2579927
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_043283253.1 → XP_043140551.1  U3 small nucleolar RNA-associated protein 13 [Aspergillus chevalieri]

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A7R7ZSU5
    Conserved Domains (4) summary
    cd00200
    Location:419 → 760
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:64 → 108
    7WD40; WD40 repeat [structural motif]
    pfam08625
    Location:782 → 948
    Utp13; Utp13 specific WD40 associated domain
    cl29593
    Location:26 → 299
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
Nucleotide Protein
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