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SMC6 structural maintenance of chromosomes protein 6 [ Aspergillus chevalieri ]

Gene ID: 66986064, updated on 31-Oct-2024

Summary

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Gene symbol
SMC6
Gene description
structural maintenance of chromosomes protein 6
Locus tag
ACHE_70549S
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Aspergillus chevalieri (strain: M1)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Eurotiomycetes; Eurotiomycetidae; Eurotiales; Aspergillaceae; Aspergillus
Orthologs
Aspergillus fumigatus all
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Genomic context

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See SMC6 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
14
Sequence:
Chromosome: 7; NC_057368.1 (1606748..1610949)

Chromosome 7 - NC_057368.1Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene Cys-Gly metallodipeptidase Neighboring gene DExD/H-box ATP-dependent RNA helicase dhh1 Neighboring gene uncharacterized protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_057368.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables damaged DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables single-stranded DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in double-strand break repair via homologous recombination IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of Smc5-Smc6 complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in site of double-strand break IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
structural maintenance of chromosomes protein 6
XP_043140228.1
  • BUSCO:EOG092608RH;
    COG:L;
    EggNog:ENOG410PGUP;
    InterPro:IPR003395,IPR027417,IPR027132;
    PFAM:PF13476,PF02463;
    go_component: GO:0030915 - Smc5-Smc6 complex [Evidence IEA];
    go_process: GO:0000724 - double-strand break repair via homologous recombination [Evidence IEA];
    go_process: GO:0006281 - DNA repair [Evidence IEA]

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_057368.1 Reference assembly

    Range
    1606748..1610949
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_043282894.1 → XP_043140228.1  structural maintenance of chromosomes protein 6 [Aspergillus chevalieri]

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A7R7VVT6
    Conserved Domains (2) summary
    COG1196
    Location:99 → 1108
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    cl38936
    Location:99 → 254
    P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases
Nucleotide Protein
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