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WC1 blue light receptor [ Aspergillus chevalieri ]

Gene ID: 66986031, updated on 31-Oct-2024

Summary

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Gene symbol
WC1
Gene description
blue light receptor
Locus tag
ACHE_70516A
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Aspergillus chevalieri (strain: M1)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Eurotiomycetes; Eurotiomycetidae; Eurotiales; Aspergillaceae; Aspergillus
Orthologs
Aspergillus fumigatus all
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Genomic context

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See WC1 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
4
Sequence:
Chromosome: 7; NC_057368.1 (1510366..1513149, complement)

Chromosome 7 - NC_057368.1Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_057368.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
blue light receptor
XP_043140195.1
  • COG:K;
    EggNog:ENOG410PJCC;
    InterPro:IPR000679,IPR035965,IPR001610,IPR013088, IPR013655,IPR000014;
    PFAM:PF13426,PF08447,PF14598,PF00320,PF00989;
    go_function: GO:0005515 - protein binding [Evidence IEA];
    go_function: GO:0008270 - zinc ion binding [Evidence IEA];
    go_function: GO:0043565 - sequence-specific DNA binding [Evidence IEA];
    go_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_057368.1 Reference assembly

    Range
    1510366..1513149 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_043282858.1 → XP_043140195.1  blue light receptor [Aspergillus chevalieri]

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A7R7VWS3
    Conserved Domains (3) summary
    smart00401
    Location:822 → 871
    ZnF_GATA; zinc finger binding to DNA consensus sequence [AT]GATA[AG]
    PRK13558
    Location:306 → 423
    PRK13558; bacterio-opsin activator; Provisional
    cd00130
    Location:615 → 714
    PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases