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9030624G23Rik RIKEN cDNA 9030624G23 gene [ Mus musculus (house mouse) ]

Gene ID: 66808, updated on 8-Feb-2024

Summary

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Official Symbol
9030624G23Rikprovided by MGI
Official Full Name
RIKEN cDNA 9030624G23 geneprovided by MGI
Primary source
MGI:MGI:1914058
See related
Ensembl:ENSMUSG00000073158 AllianceGenome:MGI:1914058
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary
Is expressed in branchial arch; genitourinary system; limb; maxillary process; and trunk somite. [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in limb E14.5 (RPKM 1.9), whole brain E14.5 (RPKM 1.7) and 27 other tissues See more
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Genomic context

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See 9030624G23Rik in Genome Data Viewer
Location:
12 A1.3; 12 8.46 cM
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 12 NC_000078.7 (24093529..24147257, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 12 NC_000078.6 (24043528..24097256, complement)

Chromosome 12 - NC_000078.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 17330 Neighboring gene predicted gene 5954 Neighboring gene STARR-seq mESC enhancer starr_31749 Neighboring gene STARR-seq mESC enhancer starr_31750 Neighboring gene predicted gene, 47446 Neighboring gene predicted gene, 21297

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. A systems approach reveals that the myogenesis genome network is regulated by the transcriptional repressor RP58. Yokoyama S, et al. Dev Cell, 2009 Dec. PMID 20059953, Free PMC Article
  2. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  3. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  4. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
  5. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article

See all (8) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
uncharacterized protein LOC66808

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001256489.2 → NP_001243418.1  uncharacterized protein LOC66808 isoform 2

    See identical proteins and their annotated locations for NP_001243418.1

    Status: VALIDATED

    Source sequence(s)
    AC150661
    Consensus CDS
    CCDS56833.1
    UniProtKB/TrEMBL
    Q9D308
    Related
    ENSMUSP00000099077.4, ENSMUST00000101538.5
    Conserved Domains (2) summary
    smart00349
    Location:45 → 86
    KRAB; krueppel associated box
    pfam01352
    Location:45 → 82
    KRAB; KRAB box

  2. NM_001382819.1 → NP_001369748.1  uncharacterized protein LOC66808 isoform 1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
    Source sequence(s)
    AC150661
    Conserved Domains (4) summary
    COG5048
    Location:198 → 571
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:174 → 194
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam01352
    Location:45 → 85
    KRAB; KRAB box
    pfam13465
    Location:158 → 182
    zf-H2C2_2; Zinc-finger double domain

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000078.7 Reference GRCm39 C57BL/6J

    Range
    24093529..24147257 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036157580.1 → XP_036013473.1  uncharacterized protein LOC66808 isoform X1

    Conserved Domains (3) summary
    COG5048
    Location:125 → 498
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:101 → 121
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:85 → 109
    zf-H2C2_2; Zinc-finger double domain
Nucleotide Protein Strain
Heading Accession and Version

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