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4933432I09Rik RIKEN cDNA 4933432I09 gene [ Mus musculus (house mouse) ]

Gene ID: 66779, updated on 22-Oct-2024

Summary

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Official Symbol
4933432I09Rikprovided by MGI
Official Full Name
RIKEN cDNA 4933432I09 geneprovided by MGI
Primary source
MGI:MGI:1914029
See related
Ensembl:ENSMUSG00000116557 AllianceGenome:MGI:1914029
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Expression
Biased expression in testis adult (RPKM 15.8), cortex adult (RPKM 2.1) and 2 other tissues See more
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Genomic context

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See 4933432I09Rik in Genome Data Viewer
Location:
16 A3; 16 11.28 cM
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 16 NC_000082.7 (18027550..18031727, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 16 NC_000082.6 (18209686..18213863, complement)

Chromosome 16 - NC_000082.7Genomic Context describing neighboring genes Neighboring gene microRNA 6366 Neighboring gene predicted gene, 34679 Neighboring gene coiled-coil domain containing 188 Neighboring gene zinc finger, DHHC domain containing 8 Neighboring gene CapStarr-seq enhancer MGSCv37_chr16:18231149-18231350

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_015575.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) contains an alternate exon at the 5' end, and is shorter than variant 1.
    Source sequence(s)
    AK017024, AK161480
    Related
    ENSMUST00000232501.3

  2. NR_027843.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript.
    Source sequence(s)
    AK161480

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000082.7 Reference GRCm39 C57BL/6J

    Range
    18027550..18031727 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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