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Pacrgl PARK2 co-regulated-like [ Mus musculus (house mouse) ]

Gene ID: 66768, updated on 28-Oct-2024

Summary

Official Symbol
Pacrglprovided by MGI
Official Full Name
PARK2 co-regulated-likeprovided by MGI
Primary source
MGI:MGI:1914018
See related
Ensembl:ENSMUSG00000029089 AllianceGenome:MGI:1914018
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
4933428G09Rik
Summary
Orthologous to human PACRGL (parkin coregulated like). [provided by Alliance of Genome Resources, Oct 2024]
Expression
Broad expression in testis adult (RPKM 12.7), CNS E11.5 (RPKM 4.1) and 21 other tissues See more
Orthologs
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Genomic context

See Pacrgl in Genome Data Viewer
Location:
5 B3; 5 26.25 cM
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 5 NC_000071.7 (48529736..48546187)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 5 NC_000071.6 (48372392..48388756)

Chromosome 5 - NC_000071.7Genomic Context describing neighboring genes Neighboring gene calmodulin 2 pseudogene Neighboring gene STARR-seq mESC enhancer starr_13022 Neighboring gene STARR-seq mESC enhancer starr_13023 Neighboring gene STARR-seq mESC enhancer starr_13024 Neighboring gene slit guidance ligand 2 Neighboring gene microRNA 218-1 Neighboring gene STARR-seq mESC enhancer starr_13026 Neighboring gene STARR-positive B cell enhancer ABC_E4755 Neighboring gene RIKEN cDNA 5730480H06 gene Neighboring gene Kv channel interacting protein 4 Neighboring gene predicted gene, 52772

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (2) 

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_025755.4NP_080031.1  PACRG-like protein

    See identical proteins and their annotated locations for NP_080031.1

    Status: VALIDATED

    Source sequence(s)
    AC101004
    Consensus CDS
    CCDS19281.1
    UniProtKB/Swiss-Prot
    Q9D3X5
    Related
    ENSMUSP00000030968.3, ENSMUST00000030968.7
    Conserved Domains (1) summary
    pfam10274
    Location:78245
    ParcG; Parkin co-regulated protein

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000071.7 Reference GRCm39 C57BL/6J

    Range
    48529736..48546187
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)