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Gm7854 predicted gene 7854 [ Mus musculus (house mouse) ]

Gene ID: 665934, updated on 17-Aug-2024

Summary

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Official Symbol
Gm7854provided by MGI
Official Full Name
predicted gene 7854provided by MGI
Primary source
MGI:MGI:3648234
See related
Ensembl:ENSMUSG00000085720 AllianceGenome:MGI:3648234
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
EG665934
Expression
Broad expression in duodenum adult (RPKM 13.0), testis adult (RPKM 7.2) and 18 other tissues See more
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Genomic context

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See Gm7854 in Genome Data Viewer
Location:
5 B3; 5 23.65 cM
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 5 NC_000071.7 (43309029..43392697, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 5 NC_000071.6 (43151686..43235354, complement)

Chromosome 5 - NC_000071.7Genomic Context describing neighboring genes Neighboring gene predicted gene 5554 Neighboring gene predicted gene 43700 Neighboring gene STARR-seq mESC enhancer starr_12966 Neighboring gene STARR-seq mESC enhancer starr_12967 Neighboring gene STARR-seq mESC enhancer starr_12968 Neighboring gene predicted gene, 46911 Neighboring gene cytoplasmic polyadenylation element binding protein 2 Neighboring gene STARR-seq mESC enhancer starr_12969 Neighboring gene STARR-positive B cell enhancer mm9_chr5:43715638-43715939 Neighboring gene STARR-seq mESC enhancer starr_12970 Neighboring gene predicted gene 43699 Neighboring gene STARR-seq mESC enhancer starr_12971 Neighboring gene C1q and tumor necrosis factor related protein 7 Neighboring gene predicted gene 15866

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. The Vertebrate Genome Annotation browser 10 years on. Harrow JL, et al. Nucleic Acids Res, 2014 Jan. PMID 24316575, Free PMC Article
  2. Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Hansen GM, et al. Genome Res, 2008 Oct. PMID 18799693, Free PMC Article
  3. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  4. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  5. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article

See all (9) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_028417.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC105174, AC115947, AC158783
    Related
    ENSMUST00000187409.3

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000071.7 Reference GRCm39 C57BL/6J

    Range
    43309029..43392697 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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