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Gm7827 predicted gene 7827 [ Mus musculus (house mouse) ]

Gene ID: 665858, updated on 17-Aug-2024

Summary

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Official Symbol
Gm7827provided by MGI
Official Full Name
predicted gene 7827provided by MGI
Primary source
MGI:MGI:3646513
See related
AllianceGenome:MGI:3646513
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
EG665858
Expression
Biased expression in testis adult (RPKM 11.4), CNS E18 (RPKM 0.7) and 2 other tissues See more
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Genomic context

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See Gm7827 in Genome Data Viewer
Location:
8 B3.3; 8 34.43 cM
Exon count:
25
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 8 NC_000074.7 (71542508..71624100)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 8 NC_000074.6 (71091701..71171456)

Chromosome 8 - NC_000074.7Genomic Context describing neighboring genes Neighboring gene zinc finger protein 709 pseudogene Neighboring gene predicted gene, 17576 Neighboring gene vomeronasal 2, receptor, pseudogene 90 Neighboring gene predicted gene 3643 Neighboring gene STARR-seq mESC enhancer starr_21808 Neighboring gene STARR-positive B cell enhancer mm9_chr8:73660786-73661086 Neighboring gene predicted gene, 38415 Neighboring gene STARR-positive B cell enhancer ABC_E8243 Neighboring gene predicted gene, 29701 Neighboring gene adenine phosphoribosyl transferase, pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Assembly, verification, and initial annotation of the NIA mouse 7.4K cDNA clone set. VanBuren V, et al. Genome Res, 2002 Dec. PMID 12466305, Free PMC Article
  2. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  3. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  4. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
  5. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article

See all (8) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

General protein information

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Preferred Names
uncharacterized protein LOC665858

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001324526.1 → NP_001311455.1  uncharacterized protein LOC665858

    Status: VALIDATED

    Source sequence(s)
    AC161410, AK133183, BB614445, BQ552747

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000074.7 Reference GRCm39 C57BL/6J

    Range
    71542508..71624100
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036154237.1 → XP_036010130.1  uncharacterized protein LOC665858 isoform X1

    Conserved Domains (3) summary
    pfam05109
    Location:480 → 585
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
    sd00045
    Location:204 → 232
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:206 → 297
    Ank_2; Ankyrin repeats (3 copies)

  2. XM_017312935.2 → XP_017168424.1  uncharacterized protein LOC665858 isoform X4

    Conserved Domains (3) summary
    pfam05109
    Location:308 → 413
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
    sd00045
    Location:32 → 60
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:34 → 125
    Ank_2; Ankyrin repeats (3 copies)

  3. XM_017312933.2 → XP_017168422.1  uncharacterized protein LOC665858 isoform X2

    Conserved Domains (3) summary
    pfam05109
    Location:431 → 536
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
    sd00045
    Location:155 → 183
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:157 → 248
    Ank_2; Ankyrin repeats (3 copies)

  4. XM_036154238.1 → XP_036010131.1  uncharacterized protein LOC665858 isoform X4

    Conserved Domains (3) summary
    pfam05109
    Location:308 → 413
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
    sd00045
    Location:32 → 60
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:34 → 125
    Ank_2; Ankyrin repeats (3 copies)

  5. XM_017312936.2 → XP_017168425.1  uncharacterized protein LOC665858 isoform X4

    Conserved Domains (3) summary
    pfam05109
    Location:308 → 413
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
    sd00045
    Location:32 → 60
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:34 → 125
    Ank_2; Ankyrin repeats (3 copies)

  6. XM_017312934.2 → XP_017168423.1  uncharacterized protein LOC665858 isoform X3

    Conserved Domains (3) summary
    pfam05109
    Location:363 → 468
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
    sd00045
    Location:84 → 115
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:89 → 180
    Ank_2; Ankyrin repeats (3 copies)
Nucleotide Protein Strain
Heading Accession and Version

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