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FGY93_RS21065 carbohydrate-binding protein [ Paenibacillus polymyxa ]

Gene ID: 66577481, updated on 27-Apr-2024

Summary

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Gene symbol
FGY93_RS21065
Gene description
carbohydrate-binding protein
Locus tag
FGY93_RS21065
Gene type
protein coding
Organism
Paenibacillus polymyxa (strain: ZF129, nat-host: Potato)
Lineage
Bacteria; Bacillota; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus
Old locus tag
FGY93_21065
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Genomic context

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NZ_CP040829.1Genomic Context describing neighboring genes Neighboring gene GNAT family N-acetyltransferase Neighboring gene glycoside hydrolase family 16 protein Neighboring gene AMP-binding protein Neighboring gene condensation domain-containing protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NZ_CP040829.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Ab initio structure determination and functional characterization of CBM36; a new family of calcium-dependent carbohydrate binding modules. Jamal-Talabani S, et al. Structure, 2004 Jul. PMID 15242594
  2. Purification and characterization of an arabinofuranosidase from Bacillus polymyxa expressed in Bacillus subtilis. Morales P, et al. Appl Microbiol Biotechnol, 1995 Dec. PMID 8579824
  3. Two beta-glycanase genes are clustered in Bacillus polymyxa: molecular cloning, expression, and sequence analysis of genes encoding a xylanase and an endo-beta-(1,3)-(1,4)-glucanase. Gosalbes MJ, et al. J Bacteriol, 1991 Dec. PMID 1938968, Free PMC Article

GeneRIFs: Gene References Into Functions

General protein information

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Preferred Names
carbohydrate-binding protein

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NZ_CP040829.1 Reference assembly

    Range
    4791415..4793322 complement
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    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. WP_019687278.1 MULTISPECIES: carbohydrate-binding protein [Paenibacillus]

    See identical proteins and their annotated locations for WP_019687278.1

    UniProtKB/Swiss-Prot
    P45796
    UniProtKB/TrEMBL
    A0A378Y077
    Conserved Domains (3) summary
    cd04078
    Location:516 → 634
    CBM36_xylanase-like; Carbohydrate Binding Module family 36 (CBM36); appended mainly to glycoside hydrolase family 11 (GH11) domains; xylan binding
    cd04084
    Location:379 → 507
    CBM6_xylanase-like; Carbohydrate Binding Module 6 (CBM6); many are appended to glycoside hydrolase (GH) family 11 and GH43 xylanase domains
    cd09003
    Location:39 → 362
    GH43_XynD-like; Glycosyl hydrolase family 43 protein such as Bacillus subtilis arabinoxylan arabinofuranohydrolase (XynD;BsAXH-m23;BSU18160)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P45796.1