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c transcriptional repressor [ Rhizobium phage 16-3 ]

Gene ID: 6654090, updated on 21-Jun-2023

Summary

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Gene symbol
c
Gene description
transcriptional repressor
Locus tag
RM163_067
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rhizobium phage 16-3
Lineage
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Siphoviridae
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Genomic context

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Sequence:
NC_011103.1 (35673..36464, complement)

NC_011103.1Genomic Context describing neighboring genes Neighboring gene p063 Neighboring gene p064 Neighboring gene p065 Neighboring gene p066 Neighboring gene p068 Neighboring gene p069 Neighboring gene helix-turn-helix domain-containing protein Neighboring gene p71

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_011103.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Identification of tail genes in the temperate phage 16-3 of Sinorhizobium meliloti 41. Deák V, et al. J Bacteriol, 2010 Mar. PMID 20081029, Free PMC Article
  2. Identification of cohesive ends and genes encoding the terminase of phage 16-3. Ganyu A, et al. J Bacteriol, 2005 Apr. PMID 15774897, Free PMC Article
  3. H protein of bacteriophage 16-3 and RkpM protein of Sinorhizobium meliloti 41 are involved in phage adsorption. Putnoky P, et al. J Bacteriol, 2004 Mar. PMID 14996788, Free PMC Article
  4. immX immunity region of rhizobium phage 16-3: two overlapping cistrons of repressor function. Csiszovszki Z, et al. J Bacteriol, 2003 Aug. PMID 12867446, Free PMC Article
  5. Binding sites of different geometries for the 16-3 phage repressor. Papp PP, et al. Proc Natl Acad Sci U S A, 2002 Jun 25. PMID 12084925, Free PMC Article

See all (9) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Miscellaneous features

  • Loc: c36443 alternative start for C repressor protein; results in a 7 AA shorter product; the ratio of normal length and alternative product is 1:1 experiment = confirmed by N-terminal protein sequencing

General protein information

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Preferred Names
transcriptional repressor

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_011103.1 Reference assembly

    Range
    35673..36464 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. YP_002117625.1 transcriptional repressor [Rhizobium phage 16-3]

    See identical proteins and their annotated locations for YP_002117625.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    B4UTV5, P15238, Q9MCD2
    Conserved Domains (5) summary
    cd06529
    Location:169 → 257
    S24_LexA-like; Peptidase S24 LexA-like proteins are involved in the SOS response leading to the repair of single-stranded DNA within the bacterial cell. This family includes: the lambda repressor CI/C2 family and related bacterial prophage repressor proteins; LexA (EC ...
    smart00530
    Location:15 → 67
    HTH_XRE; Helix-turn-helix XRE-family like proteins
    COG1396
    Location:15 → 113
    HipB; Transcriptional regulator, contains XRE-family HTH domain [Transcription]
    COG2932
    Location:123 → 256
    COG2932; Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains [Mobilome: prophages, transposons]
    cl14633
    Location:54 → 93
    DD; Death Domain Superfamily of protein-protein interaction domains
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P15238.4

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