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si:ch73-130a3.4 si:ch73-130a3.4 [ Danio rerio (zebrafish) ]

Gene ID: 664763, updated on 2-Nov-2024

Summary

Official Symbol
si:ch73-130a3.4provided by ZNC
Official Full Name
si:ch73-130a3.4provided by ZNC
Primary source
ZFIN:ZDB-GENE-141219-41
See related
Ensembl:ENSDARG00000056213 AllianceGenome:ZFIN:ZDB-GENE-141219-41
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
zgc:122991
Summary
Predicted to enable DNA binding activity and metal ion binding activity. Orthologous to human THAP6 (THAP domain containing 6). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
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Genomic context

See si:ch73-130a3.4 in Genome Data Viewer
Location:
chromosome: 19
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 19 NC_007130.7 (29854238..29861015)
105 previous assembly GRCz10 (GCF_000002035.5) 19 NC_007130.6 (30266916..30273870)

Chromosome 19 - NC_007130.7Genomic Context describing neighboring genes Neighboring gene eukaryotic translation initiation factor 3, subunit I Neighboring gene taxilin alpha Neighboring gene karyopherin alpha 6 (importin alpha 7) Neighboring gene uncharacterized LOC137488528 Neighboring gene KH domain containing, RNA binding, signal transduction associated 1b

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

General protein information

Preferred Names
uncharacterized protein LOC664763

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001245063.2NP_001231992.2  uncharacterized protein LOC664763

    Status: VALIDATED

    Source sequence(s)
    CU633192
    UniProtKB/TrEMBL
    A0A8M1NYS7, F6P462

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007130.7 Reference GRCz11 Primary Assembly

    Range
    29854238..29861015
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_068215292.1XP_068071393.1  uncharacterized protein LOC664763

    Related
    ENSDARP00000100340.3, ENSDART00000109729.4