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B3GALT6 beta-1,3-galactosyltransferase 6 [ Canis lupus familiaris (dog) ]

Gene ID: 664717, updated on 17-Aug-2024

Summary

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Official Symbol
B3GALT6provided by VGNC
Official Full Name
beta-1,3-galactosyltransferase 6provided by VGNC
Primary source
VGNC:VGNC:53266
See related
Ensembl:ENSCAFG00845023048
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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See B3GALT6 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
1
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 5 NC_051809.1 (56624609..56628479)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 5 NC_006587.4 (56498687..56502557)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 5 NC_049226.1 (56897625..56901495)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 5 NC_049265.1 (56615345..56619215)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 5 NC_049746.1 (56507624..56511494)

Chromosome 5 - NC_051809.1Genomic Context describing neighboring genes Neighboring gene TNF receptor superfamily member 4 Neighboring gene stromal cell derived factor 4 Neighboring gene uncharacterized LOC119871889 Neighboring gene C1q and TNF related 12 Neighboring gene ubiquitin conjugating enzyme E2 J2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables UDP-galactosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in glycosaminoglycan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
beta-1,3-galactosyltransferase 6
Names
UDP-Gal:betaGal beta 1,3-galactosyltransferase polypeptide 6
XP_038332359.1
XP_038377511.1
XP_038393506.1
XP_038457664.1
XP_038522233.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001048137.1 → NP_001041602.1  beta-1,3-galactosyltransferase 6

    See identical proteins and their annotated locations for NP_001041602.1

    Status: PROVISIONAL

    Source sequence(s)
    AM235753
    UniProtKB/TrEMBL
    A0A8C0RWR3, Q257A0
    Conserved Domains (1) summary
    cl21608
    Location:70 → 260
    Galactosyl_T; Galactosyltransferase

RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051809.1 Reference ROS_Cfam_1.0

    Range
    56624609..56628479
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038666305.1 → XP_038522233.1  beta-1,3-galactosyltransferase 6

    UniProtKB/TrEMBL
    A0A8C0KEQ5, A0A8C0LU96, A0A8C0RWR3, A0A8I3PLU7
    Related
    ENSCAFP00845031836.1, ENSCAFT00845040673.1
    Conserved Domains (1) summary
    cl21608
    Location:69 → 260
    Galactosyl_T; Galactosyltransferase

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049265.1 Alternate UMICH_Zoey_3.1

    Range
    56615345..56619215
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038476431.1 → XP_038332359.1  beta-1,3-galactosyltransferase 6

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049746.1 Alternate UNSW_CanFamBas_1.0

    Range
    56507624..56511494
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038601736.1 → XP_038457664.1  beta-1,3-galactosyltransferase 6

    Conserved Domains (1) summary
    cl21608
    Location:69 → 260
    Galactosyl_T; Galactosyltransferase

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049226.1 Alternate UU_Cfam_GSD_1.0

    Range
    56897625..56901495
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038537578.1 → XP_038393506.1  beta-1,3-galactosyltransferase 6

    UniProtKB/TrEMBL
    A0A8C0KEQ5, A0A8C0LU96, A0A8C0RWR3, A0A8I3PLU7
    Conserved Domains (1) summary
    cl21608
    Location:69 → 260
    Galactosyl_T; Galactosyltransferase

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006587.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    56498687..56502557
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038521583.1 → XP_038377511.1  beta-1,3-galactosyltransferase 6

    UniProtKB/TrEMBL
    A0A8C0KEQ5, A0A8C0LU96, A0A8C0RWR3, A0A8I3PLU7
    Conserved Domains (1) summary
    cl21608
    Location:69 → 260
    Galactosyl_T; Galactosyltransferase
Nucleotide Protein
Heading Accession and Version

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